BAC Information

Click to search

BAC

Clone NameMSMg01-078F17
Chromosome4 (Build37)
Map Location 81,704,701 - 81,705,219
singlet/doubletsinglet
Overlap genenone
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164
Downstream geneEG545641, Nfib, Zdhhc21, Cer1, Frem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078F17.T7 (MSMg01no078_f17.b1)MSMg01-078F17.TJ (MSMg01no078_f17.g1)
ACCAG299712AG299713
length690688
length of high quality
(start - end)
523 (46 - 568)496 (74 - 569)
definitionCHROMAT_FILE: MSMg01no078_f17.b1 PHD_FILE: MSMg01no078_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:39 2005CHROMAT_FILE: MSMg01no078_f17.g1 PHD_FILE: MSMg01no078_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTACAGGCGCCCATGGAGGACATTTCTCATTCAAACTGCCACA
AAAGTTATAGGCAAAGTCTTTCCTCAAAAATATAAAGAATTGTTAACATA
ATTTAGTTAAATTAATATTTTATGATATAAGAAATATCTGCTAATCTCTG
ATTACTGTTAATAATATCCTCAATTTTTTTAATGCATTTGAAGCAACTAT
AAAACATTAGTGGCCTGTGGCAACAGGCATTCATTTTGTGGTCCTTAATT
GACTCTAAGCTTCAGATTCTAGATGCCTCTTTTTAAAAAAATTCTTAGAC
GTACGCTTTTCTTAGGGATATCAGGGACATTTGAGTGTAAGGGGAGTCAT
GTAACTCATCCCTCAAACCATTGTCTGTATCATGTCTTCTAACATCCCTT
TGGTGACAATAATTCACACGGTAGAAGTCAGAATTAAGAGGGAGGAAAGT
GCTTGATGATAAGGCAATGTGTGGGTGACTAACTACTGGGGTGACACATG
AAGAACGATGTCCAGGATGCGGCTGTGGTTTCACGAGAGAGAATTGCCAA
GGAATTTTGATGTTTTAGAGATTATTATTTCTGTCCTTAAAACATAGCCT
GGTCTTCATACCCTTCTTTGATATCTCTTCTCTTTCACTA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAGGTAATACTTCAGACTGAAAAAA
AAGAAGTGAGCATTGCCATAAGACTATAGAAAGAAAACAAATATGGCTGA
CTGCTGAAAGCGAAACCAGGACTAAGAACATAACATGGAAAAATAGCAGA
GTGACAGCAGTCAGCAGTCAGTTTTCAACAATAACTTGCAATATTAATGG
CCTCAACTTCCTAATCAAAAAAAACGCAGGTTAGTTGGATGGACTAAGAA
ATAAGATCTTTCATTTTGCTATCTAAAAGAGATACATATCACCTTTAAGA
ATAGGTTCCTCTTCAAAGTGAAAGGTTGGGAAGAAAAGTATTCTAAGGAA
ATGGGATCAGGAGGCTCCCATAACCTAATATCTGACAAAATAGACTTCAG
TTAACCAAGGCTAATTAGAATAGATAAAGAAGGATACTTCATTATGATCA
AGGTAACAATTAATTAAGAAGACATTATACTACTTAATATACATGCACTA
AGTTCTCACATGTTCAGTTTTATAAGAAAAAAAAAAGAACAACAACAAAA
ACAGAAACATTCTATTGCACTTGACAATAAAAATTAACCCTGACTCAGCA
ATAGCGAGNAATTTCCGTACCCCAGTGCCTTAGTCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_f17.b1 MSMg01no078_f17.b1 CHROMAT_FILE:
MSMg01no078_f17.b1 PHD_FILE: MSMg01no078_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:39 2005
         (523 letters)



>mm_chr4_81704446_81705368
          Length = 923

 Score =  980 bits (507), Expect = 0.0
 Identities = 516/519 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaactacaggcgcccatggaggacatttctcattcaaactgccacaaaagttata 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaattcaactacaggagcccatggaggacatttctcattcaaactgccacaaaagttata 715

                                                                       
Query: 65  ggcaaagtctttcctcaaaaatataaagaattgttaacataatttagttaaattaatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ggcaaagtctttcctcaaaaatataaagaattgttaacataatttagttaaattaatatt 655

                                                                       
Query: 125 ttatgatataagaaatatctgctaatctctgattactgttaataatatcctcaatttttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttatgatataagaaatatctgctaatctctgattactgttaataatatcctcaatttttt 595

                                                                       
Query: 185 taatgcatttgaagcaactataaaacattagtggcctgtggcaacaggcattcattttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taatgcatttgaagcaactataaaacattagtggcctgtggcaacaggcattcattttgt 535

                                                                       
Query: 245 ggtccttaattgactctaagcttcagattctagatgcctctttttaaaaaaattcttaga 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 534 ggtccttaattgactctaagcttcagattcaagatgcctctttttaaaaaaattcttaga 475

                                                                       
Query: 305 cgtacgcttttcttagggatatcagggacatttgagtgtaaggggagtcatgtaactcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cgtacgcttttcttagggatatcagggacatttgagtgtaaggggagtcatgtaactcat 415

                                                                       
Query: 365 ccctcaaaccattgtctgtatcatgtcttctaacatccctttggtgacaataattcacac 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ccctcaaagcattgtctgtatcatgtcttctaacatccctttggtgacaataattcacac 355

                                                                       
Query: 425 ggtagaagtcagaattaagagggaggaaagtgcttgatgataaggcaatgtgtgggtgac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggtagaagtcagaattaagagggaggaaagtgcttgatgataaggcaatgtgtgggtgac 295

                                                  
Query: 485 taactactggggtgacacatgaagaacgatgtccaggat 523
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 294 taactactggggtgacacatgaagaacgatgtccaggat 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)