BAC Information

Click to search

BAC

Clone NameMSMg01-078I07
Chromosome4 (Build37)
Map Location 49,267,779 - 49,268,254
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078I07.T7 (MSMg01no078_i07.b1)MSMg01-078I07.TJ (MSMg01no078_i07.g1)
ACCAG299834AG299835
length704702
length of high quality
(start - end)
480 (46 - 525)445 (75 - 519)
definitionCHROMAT_FILE: MSMg01no078_i07.b1 PHD_FILE: MSMg01no078_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:52 2005CHROMAT_FILE: MSMg01no078_i07.g1 PHD_FILE: MSMg01no078_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAGACCTGCCAAAAATGAGAGAATCAAGAACGAAGATGAACCCC
AACTAGGACTGTGGACTACTGCAGTCACACCAAACAAGCTTAGCATGGGA
AAGTAACTGATAACCCTAATGAAAGGAATCTGAGAGAGAAGGGACCAGAG
AGCCCAACAGAAGGAGCCCCTGGGTAGCTTTGCAGGGAAGAAAGAGAAAA
CTGGATGATATCCTGAAAATTGAGAATAATGGCCACAAGGTTTTGTTTCT
GTATTCCATGTTGGTTGCTCTCAGTGTTTAAGATCTTTGCAGAAGCAGTA
ATGCTAAAGCTGCTTAACATTCCAGAGGAGAAAAATACACAAATGGAGAA
GCTCTCAGCAAGACAAATCAGTTAGCAGCTGATACGTTACAGGACATTTC
CTGTGTCTGGTGGCTTGAAGCATTCCCGTTTGTTGAGTTGCTCCCCATGT
TTGAGCAATGGATTATTTTAGATACTCGTGTTAGGAATTCTCCTTTTTAT
TTATATTAGTTTATAGTTAGATTCAGCACTTCATTTTGGGTATGGACTGA
CTCTGATATAAAATTATCTGTACTTACCAAATCCCTGTAATTTGGAGACA
ACTTCTTTACTCTTCTGATTTGTAATGCCTTTGGTATAATGAAATCCATC
TTGA
TTTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACCAGAGAAA
CACAGTCTCGAAAAAAAAAATCAAAAACAAACAAACAAATTAGCCATATT
GCTTCTGCAGCGTTCTGTGGAGAGAAACTATGCTTTTCCCTTTCCTAATA
AGGTAGTTGTTCAGGATCAAACCATATGCCAATAAGTAGATCTTTTTAAG
ATACTAGAAGGCATTTATTAAGTTCGTTGACATCCAAATTTCAAAATTCT
AAAATAATGGTGTGATTTAAATAATGTGCATGGGAATACATTTAATATGC
ACGGGGATATATTTTCCCACTTCTTTGTCTTTTAAGAATCTAGAGTTTTA
AAGTTCCACAATACCTTGTCCTTGAGAATTAATAATATGTTGACAAAACA
TCACAAATACTTGACTGTTATAGTAAGTATTAATGCAACATAGGCAGTGA
CTAATTGCACTTTCAATTGTTTTTCCTTTTTTTTAAATTTTTTTTCATTA
GGTATTTCCTCATTTACATTTCCTATGCTATACCAAAAGTCCCCCATACC
CCCCCACATCCTCCCTACCCACTTATTCCCCCTTTTTGTTCCTGGCGTTC
CTCTGTACCGTTGCATATAATGTTTGCTAGTCTTATGGGCCTCTCTTTTT
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_i07.b1 MSMg01no078_i07.b1 CHROMAT_FILE:
MSMg01no078_i07.b1 PHD_FILE: MSMg01no078_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:52 2005
         (480 letters)



>mm_chr4_49267576_49268454
          Length = 879

 Score =  868 bits (449), Expect = 0.0
 Identities = 470/477 (98%), Gaps = 1/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgagacctgccaaaaatgagagaatcaagaacgaagatgaaccccaactagga 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgagacctgg-aaaaatgagagaatcaagaacgaagatgaaccccaactagga 262

                                                                       
Query: 64  ctgtggactactgcagtcacaccaaacaagcttagcatgggaaagtaactgataacccta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgtggactactgcagtcacaccaaacaagcttagcatgggaaagtaactgataacccta 322

                                                                       
Query: 124 atgaaaggaatctgagagagaagggaccagagagcccaacagaaggagcccctgggtagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atgaaaggaatctgagagagaagggaccagagagcccaacagaaggagcccctgggtagc 382

                                                                       
Query: 184 tttgcagggaagaaagagaaaactggatgatatcctgaaaattgagaataatggccacaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttgcagggaagaaagagaaaactggatgatatcctgaaaattgagaataatggccacaa 442

                                                                       
Query: 244 ggttttgtttctgtattccatgttggttgctctcagtgtttaagatctttgcagaagcag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggttttgtttctgtattccatgttggttgctctcagtgtttaagatctttgcagaagcag 502

                                                                       
Query: 304 taatgctaaagctgcttaacattccagaggagaaaaatacacaaatggagaagctctcag 363
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 503 taatgctaaagctgtttaacattcaagaggagaaaaatacacaaatggagaagctctcag 562

                                                                       
Query: 364 caagacaaatcagttagcagctgatacgttacaggacatttcctgtgtctggtggcttga 423
           |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 563 caagacaagtcagttagcagctgatcctttacaggacatttcctgtgtctggtggcttga 622

                                                                    
Query: 424 agcattcccgtttgttgagttgctccccatgtttgagcaatggattattttagatac 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agcattcccgtttgttgagttgctccccatgtttgagcaatggattattttagatac 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 879
Length adjustment: 10
Effective length of query: 470
Effective length of database: 869
Effective search space:   408430
Effective search space used:   408430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)