Query= MSMg01no078_i09.b1 MSMg01no078_i09.b1 CHROMAT_FILE:
MSMg01no078_i09.b1 PHD_FILE: MSMg01no078_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:52 2005
(361 letters)
>mm_chr4_69940775_69941536
Length = 762
Score = 605 bits (313), Expect = e-177
Identities = 343/353 (97%), Gaps = 1/353 (0%)
Strand = Plus / Minus
Query: 6 gaattcctaagc-tacatgtgttctggagaagaagcaaacaggtcatgattctggtacct 64
|||||||||||| | ||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct: 558 gaattcctaagcagagatgtgttctggtgaagaagcaaagaggtgatgattctggtacct 499
Query: 65 ccctgaaggctgtgggacgctgggttctgacggctgttttgtagcagagaagtaactgta 124
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 498 ccctgaaggctgtgggatgctgggttctgacagctgttttgtagcagagaagtaactgta 439
Query: 125 cacactgcttcatagcatcagaatggagaattacgtttattttctgaccactaaattact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cacactgcttcatagcatcagaatggagaattacgtttattttctgaccactaaattact 379
Query: 185 gcttttgtgccttccaaacagaattagatatatcattagcaaaattgcttttgattgttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gcttttgtgccttccaaacagaattagatatatcattagcaaaattgcttttgattgttt 319
Query: 245 taaattatacaccaaaactgtaatttctagaacaggtttttctaaagatatcagtagaga 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 taaattatacaccaaaactgtaatttctagaaaaggtttttctaaagatatcagtagaga 259
Query: 305 ctaaaacaataaaatatatatactgccattatattaatggtactcaaaatgca 357
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctaaaacaaaaaaatatatatactgccattatattaatggtactcaaaatgca 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 762
Length adjustment: 9
Effective length of query: 352
Effective length of database: 753
Effective search space: 265056
Effective search space used: 265056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_i09.g1 MSMg01no078_i09.g1 CHROMAT_FILE:
MSMg01no078_i09.g1 PHD_FILE: MSMg01no078_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:52 2005
(489 letters)
>mm_chr4_69788196_69789084
Length = 889
Score = 814 bits (421), Expect = 0.0
Identities = 469/485 (96%), Gaps = 3/485 (0%)
Strand = Plus / Plus
Query: 6 aaagtttgatggttgggagggactctcaaaatccag-aaatgtgagaatgtagaaccagt 64
||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |
Sbjct: 206 aaagtttgatggttgggaggggctctcaaaatccagaaaat-tgagaatgtagaaccaat 264
Query: 65 caataggtgggtagatgacagaaatgaagggatagaggtagaaagaagcaatgggtattc 124
||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct: 265 caacaggtgggtagatgacagaaataaagggatagaagtagaaaggagcaatgggtattc 324
Query: 125 catgtaactagaaagctactgtgaagatgacccagggaaagcttttggaccaatggttct 184
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgtagctggaaagctactgtgaagatgacccagggaaagcttttggaccaatggttct 384
Query: 185 cagtctgtgggtcacaacccctttgtagatcaaacaacgcttaagaccattggactattg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtctgtgggtcacaacccctttgtagatcaaacaacgcttaagaccattggactattg 444
Query: 245 gaaagcacagacatttacatcgtgattcaaaacagtaacaaaattacagttatgatgtag 304
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct: 445 gaaagcacagacatttacatcatgattcaaaacagtagcaaaattacagttatgaagtag 504
Query: 305 caacaaagataatttttatgcattgtggatcaccacaacatgcaaaactgtattaaaggg 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caacaaagataatgtttatgcattgtggatcaccacaacatgcaaaactgtattaaaggg 564
Query: 365 ttgcaacattaggaaggctgagaactactaccttagagggtcccaaatgccaggtttcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgcaacattaggaaggctgagaactactaccttagagggtcccaaatgccaggtttcaa 624
Query: 425 agcaggtcctaattctgagtcaaccttagcattacaacaaataatgacctcttagaatct 484
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 625 agcaggtccta-ttctgagtcaaccttagtattacaacaaataatgacctcttagaatct 683
Query: 485 gctgt 489
|||||
Sbjct: 684 gctgt 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
