Query= MSMg01no078_m23.b1 MSMg01no078_m23.b1 CHROMAT_FILE:
MSMg01no078_m23.b1 PHD_FILE: MSMg01no078_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:15 2005
(661 letters)
>mm_chr4_112421285_112422345
Length = 1061
Score = 1000 bits (517), Expect = 0.0
Identities = 636/711 (89%), Gaps = 57/711 (8%)
Strand = Plus / Plus
Query: 4 ggaattctctataactatccaataaatagcaaaatattcttataaaattgtttaaaattc 63
||||||||||| |||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 154 ggaattctctacaactataaaatcaatagcaaaatattcttataaaattgcttaaaattc 213
Query: 64 atattttaaaagaaatttgcaaaacatgttcatagtatatttggatttattgaaatttat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 214 atattttaaaagaaatttgcaaaacatgttcatagtatatttggatttattgatatttat 273
Query: 124 acatagatacatacgtgcattcatatatccatatgtgcatgc------------------ 165
||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 274 acatagatacatacgtgcattcatacatccatatgtgcatgcatatatatatatgtatat 333
Query: 166 ------------------------------atatatatatatatatatac----acactc 191
|||||||||||||||||||| ||| |
Sbjct: 334 atatatatatatatatatatatatatatatatatatatatatatatatacatataca--c 391
Query: 192 atgcatgtgtatatgcacgtatgttttatatgtggtgtacatatgtgatataatctcaga 251
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atgcatgtgtatatgcaggtatgttttatatgtggtgtacatatgtgatataatctcaga 451
Query: 252 cattgttttacaaaaagcagattatattagcttcttgggagattaagtcattatttcatt 311
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cattgttttagaaaaagcagattatattagcttcttgggagattaagtcattatttcatt 511
Query: 312 ccctattttcctttcctcccttgagcccgtcccatgtaccctttggtctctctcaaattt 371
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 512 ccctattttcctttcctcccttgagcccgtcccatgtaccccttggtctctctcaaattt 571
Query: 372 gtagtctcttaaaattatttttaaaattattgtttcaaatatgcttttagttgttttgtt 431
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 572 gtagtctcttaaaattatttttaaaattattgtttcaaatatgcttttagatgttttgtt 631
Query: 432 ttagtaggttggtttgtgaaaaaaaa---tctcagtatatagttctaattggcctgaaac 488
|||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 632 ttagtaggttaatttgtgaaaaaaaaaaatctcagtatataattctaattggcctgaaac 691
Query: 489 atctgatgtaaaccatgcaggttttaactcacaaagattcacctgtctttgcctctcagg 548
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 atctgatgtacaccatgcaggttttaactcacaaagattcacctgtctttgcctctcagg 751
Query: 549 tgttacgattaaaggctacctcttcactcggttgacaattttctttgctgaacataaaca 608
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 752 tgttatgattaaaggctacctcttcacttggttgacaattttctttgctgaacataaaca 811
Query: 609 cttatcttcatgaagtcccatttgcctatccttggctttattccctatgct 659
|||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 812 cttatcttcatgaagtcccatttgcctatccttggccttattccctatgct 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_m23.g1 MSMg01no078_m23.g1 CHROMAT_FILE:
MSMg01no078_m23.g1 PHD_FILE: MSMg01no078_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:15 2005
(576 letters)
>mm_chr4_112510544_112511519
Length = 976
Score = 137 bits (71), Expect = 2e-36
Identities = 128/147 (87%), Gaps = 2/147 (1%)
Strand = Plus / Minus
Query: 431 agactttgctactagttttatcataagatataacaggagcagtgtttccatg-taaaaga 489
||||||||||| | ||| |||| |||| ||||||||| ||| ||||||||| |||| ||
Sbjct: 776 agactttgctaattgttcaatcacaagacataacaggatcagagtttccatgttaaagga 717
Query: 490 tggagctatgatggaaatgccaagagctcaactctgaaaatggttacctcacaagcctct 549
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 716 -ggagctaagatggaaatgccaagagctcaactctgaaaatatttacctcacaagcctgt 658
Query: 550 atgtttaaattaatagtacttgactaa 576
||||||| || ||||| | ||||||||
Sbjct: 657 atgtttagatcaatagcagttgactaa 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
