BAC Information

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BAC

Clone NameMSMg01-078N19
Chromosome4 (Build37)
Map Location 137,947,455 - 137,947,982
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda
Downstream geneLOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078N19.T7 (MSMg01no078_n19.b1)MSMg01-078N19.TJ (MSMg01no078_n19.g1)
ACCAG300093AG300094
length695734
length of high quality
(start - end)
532 (46 - 577)46 (74 - 119)
definitionCHROMAT_FILE: MSMg01no078_n19.b1 PHD_FILE: MSMg01no078_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:19 2005CHROMAT_FILE: MSMg01no078_n19.g1 PHD_FILE: MSMg01no078_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCCAGCACTCGGGAGGCAGGGGCATGAGGATCTCTGGAAGTTCAAGG
CTAGCCTGGTCTCCATAGTGAGATCTCCAGGACAGCTAAGGCTAACTCAG
TAAGACTTTGTCTCAAAATAAATCCGTTTTTAAAAATTGTAGACTCACAC
CATTGACATCGTACAAAACATGGGCTCCGGACGTGGAGGCGCATGCCTTT
AATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGACGCC
AGCCTGGTCTACAGAGTGTATTCCAGTATAGCCAGGGCTACACAGAAATC
TTGTCTCAAAAAGTAAAACACAAACAAACAAACAACAAAATATGGACTTA
GTGGTCGAGTACTACCTCACCATGTTTGAGCCCCCCCTACCTCTTGTAGT
TAGAACAGGATGGGTAAGCCCCTCGCCCCATTAATCCACCCCTTTGTTCC
CCACGATGTCTAGAACAGATGGAAGACTTAACAAAATATACCGTATAAAA
ACCAATAGTCCAGCTGGGTATGGTGGCTCACACTGGTTTTGAGACAGGTT
CTCACTATGTACCCTTGGCTGCTCTGGAATTGCTATGTTCACCAGGTTGT
CTTTCAACTGCCTAGCTCTGTTGGTTCTGACTCCCTGTATGCTGN
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGCATGTGAGTGTATGTGAGTATGA
GTGTATGTGTGAATGAGTCCCTCTCCCCACTACCACCATTCTACCCATTT
TCTGCCCCTCACAATTGTGTGTCTTATTTTCTTTTTAGCGACTATTGTTC
CTCTTCCTACACTACCGCCCCATGATCAGCTGCTTCACTTTCCCCACCTC
CATGTTAGCTTACTTCCTTCCCGCCTTTGATTTCTCATTCGAGCGTGCCC
CTCCTTCCCCTCACCATCCTTTTTCTTCTGTTCCTTCGTCGCTCTATCAA
CATCTCTACCCCTCCCTATCCCCCCCCCCCTCCACCTCGTGAATACTAAT
TTCTCCTCTCTTTCTTCTCCCCCCCCTTCCTACAACCCAGTCTCCCTTTT
GCACTCTCCCCTCTCTCTCCTTCTCCTCCCACTCGTCCTCTCTTACCATT
CCTTTATACCTACTCACCCCCCTCCTACTTCTTCTTTCATCAACACCACA
CATACACTTCCCCACCTGACCTTTTCCCCTCCCCCTACTCTTTTATTACT
TCTCTTTTCCCCCATACTCTTCATCTATTCTCCCTCCTTCCCTTTTCTTC
TTTTCCTCCCCTCCCCTCCCCCCCTCACCTTTCTCACCTTCCACCCCTCA
TTACTTCTGCCCTTTCCTTCCCCTCATATCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_n19.b1 MSMg01no078_n19.b1 CHROMAT_FILE:
MSMg01no078_n19.b1 PHD_FILE: MSMg01no078_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:19 2005
         (532 letters)



>mm_chr4_137947251_137948182
          Length = 932

 Score =  975 bits (504), Expect = 0.0
 Identities = 522/528 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagcactcgggaggcaggggcatgaggatctctggaagttcaaggctagcctgg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagcactcgggaggcaggggcatgaggatctctggaagttcaaggctagcctgg 264

                                                                       
Query: 65  tctccatagtgagatctccaggacagctaaggctaactcagtaagactttgtctcaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctccatagtgagatctccaggacagctaaggctaactcagtaagactttgtctcaaaat 324

                                                                       
Query: 125 aaatccgtttttaaaaattgtagactcacaccattgacatcgtacaaaacatgggctccg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatccgtttttaaaaattgtagactcacaccattgacatcgtacaaaacatgggctccg 384

                                                                       
Query: 185 gacgtggaggcgcatgcctttaatcccagcacttgggaggcagaggcaggcagatttctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacgtggaggcgcatgcctttaatcccagcacttgggaggcagaggcaggcagatttctg 444

                                                                       
Query: 245 agtttgacgccagcctggtctacagagtgtattccagtatagccagggctacacagaaat 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 agtttgacgccagcctggtctacagagtgaattccagtatagccagggctacacagaaat 504

                                                                       
Query: 305 cttgtctcaaaaagtaaaacacaaacaaacaaacaacaaaatatggacttagtggtcgag 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttgtctcaaaaagtaaaaaacaaacaaacaaacaacaaaatatggacttagtggtcgag 564

                                                                       
Query: 365 tactacctcaccatgtttgagccccccctacctcttgtagttagaacaggatgggtaagc 424
           |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tactaccttagtatgtttgagccccccctacctcttgtagttagaacaggatgggtaagc 624

                                                                       
Query: 425 ccctcgccccattaatccacccctttgttccccacgatgtctagaacagatggaagactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctcgccccattaatccacccctttgttccccacgatgtctagaacagatggaagactt 684

                                                           
Query: 485 aacaaaatataccgtataaaaaccaatagtccagctgggtatggtggc 532
           || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaaaaatataccgtataaaaaccaatagtccagctgggtatggtggc 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)