Query= MSMg01no078_o23.b1 MSMg01no078_o23.b1 CHROMAT_FILE:
MSMg01no078_o23.b1 PHD_FILE: MSMg01no078_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:24 2005
(526 letters)
>mm_chr4_84348615_84349543
Length = 929
Score = 907 bits (469), Expect = 0.0
Identities = 515/533 (96%), Gaps = 7/533 (1%)
Strand = Plus / Minus
Query: 1 taagaggctgaccttgaatttgctgtgccccgtccccccagacctttcgtctgcctccta 60
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 748 taagaggctgaccttgaatttgctgtgccccgtccccccagaccttgcttctgcctccta 689
Query: 61 agtgctgagattacaggtgtgtacaaccagggccagcttgttcaagtgcattcttcatac 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 688 agtgctgagattacaggtgtgtacaaccagggccagcttgtccaagtgcattcttcatac 629
Query: 121 aatcctatagaatattactcagtatagtgacttttttcatataaagaatcttttaa---t 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 628 aatcctatagaatattactcagtatagtgacttttttcatataaagaatcttttaatttt 569
Query: 178 atattttttgataaactggagagagtttttctggagtatattgctaagactttctattta 237
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tttttttttgataaactggagagagtttttctggagtatattgctaagactttctattta 509
Query: 238 tcaaattaacggagttcacttttaatagttccatgagtcttgtatactcagagatcatta 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcaaattaacagagttcacttttaatagttccatgagtcttgtatactcagagatcatta 449
Query: 298 aaaacatttaaggctagagatagagctttatggtagaatggtagctcagcatacaccaga 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 448 aaaacatttaaggctagagatagagctttatggtagaatggtagcccagcatacaccaga 389
Query: 358 ctctgggctctatcattagcaccacagaacaaaacaccaatacacatttaatgttaactg 417
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 388 gtctgggctctatcattagcaccacagaacaaaacaccaatacacatttaatggtaactg 329
Query: 418 gttagtattattagctagcactctctctc--cctcttcttcttctcccccc--cttcctc 473
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 328 gttagtattattagctagcactctctctctccctcttcttcttctccccccaccttcctc 269
Query: 474 tcactctctcccttcccctccccctctttctctgtgccagctctcccattctg 526
|||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 268 tcactctcccccttcccctccccctctatctctgtgccagctctcccattctg 216
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 929
Length adjustment: 10
Effective length of query: 516
Effective length of database: 919
Effective search space: 474204
Effective search space used: 474204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_o23.g1 MSMg01no078_o23.g1 CHROMAT_FILE:
MSMg01no078_o23.g1 PHD_FILE: MSMg01no078_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:25 2005
(492 letters)
>mm_chr4_84177869_84178761
Length = 893
Score = 890 bits (460), Expect = 0.0
Identities = 488/504 (96%), Gaps = 12/504 (2%)
Strand = Plus / Plus
Query: 1 aagggggcagcaacaatgggtcaggagaaaggactctgtaaggaacggagaagtttcaag 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 190 aagggggcagcaacaatgggtcagaagaaaggactctgtaaggaacggagaagtttcaag 249
Query: 61 tttcacctggtgataatcagccatgaaaaaacacgttttgatgcaaaaaaaaaaaaaaa- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttcacctggtgataatcagccatgaaaaaacacgttttgatgcaaaaaaaaaaaaaaaa 309
Query: 120 ----------gttagctgtgactatggcaaagtgacatgcttaaacttgatattctctta 169
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaaaaaaaaagttagctgtgactatggcaaagtgacatgcttaaacttgatattctctta 369
Query: 170 gggatgcgcaggctttgaagctcataataaacctgaaatggttctgtggaatgttaagtc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gggatgcgcaggctttgaagctcataataaacctgaaatggttctgtggaatgttaagtc 429
Query: 230 ttaatgtaggaggtcggtgccactgtcatgcctacacagaggtatgtcaacttggaagta 289
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttaatgtagaaggtcggtgccactgtcatgcctacacagaggtatgtcaacttggaagta 489
Query: 290 gctgcactaaagctccagggcacacagaacagagagtgtaccctttgattgtatgcattt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 490 gctgcactaaagctccagggcacacagaacagagagtgtaccctttgattgtacgcattt 549
Query: 350 tatggagagttctactttgaactctaaaagaaagctgcagcatacccctgcctagttaac 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatggagagttctactttgaactctaaaagaaagctgcagcatacccctgcctagttaac 609
Query: 410 acagctaaatatggcactatacctttctcaaaaaa-cataaatgcatcatagagaaaaga 468
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 610 acagctaaatatggcactatacctttctcaaaaaaacataaatgcatcagagagaaaaga 669
Query: 469 agatggttttaaagaccctggcac 492
||||||||||||||||||||||||
Sbjct: 670 agatggttttaaagaccctggcac 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
