Query= MSMg01no079_a10.b1 MSMg01no079_a10.b1 CHROMAT_FILE:
MSMg01no079_a10.b1 PHD_FILE: MSMg01no079_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:32 2005
(587 letters)
>mm_chr4_15383559_15384545
Length = 987
Score = 781 bits (404), Expect = 0.0
Identities = 452/470 (96%), Gaps = 5/470 (1%)
Strand = Plus / Minus
Query: 121 aatgtaccacattttctgtatccattcctcacttgaagggcatctgggttctttccagct 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 987 aatgtaccacattttctgtatccattcctctcttgaagggcatctgggttctttccagct 928
Query: 181 ctggctattataaataaggctactatgaacatcgtggagcacgtgtccttattaccagtt 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 927 ctggctattataaataaggctactatgaacatcatggagcacgtgtccttattaccagtt 868
Query: 241 ggagcatcttctggatatatgcccaggagaggtattgcaggatcgtctggtagtactatg 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 867 ggagcatcttctggatatatgcccaggagaggtattgcaggatcctctggtagtactatg 808
Query: 301 tccaattttctgaggaaccgccagattgatttccagagtggttgtaccagcttgcaatcc 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 tccaattttctgaggaaccaccagattgatttccagagtggttgtaccagcttgcaatcc 748
Query: 361 caccaacaacggaggagtaggtggtagttttattagagataagtatatcaatatttcatg 420
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 747 caccaacaatggaggagtaggtggtagttttattagagataagtatataaatatttcatg 688
Query: 421 gtaaaatgagggattgtaaatagaaaaacaataacaatggtaagaatgaaaagaagttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gtaaaatgagggattgtaaatagaaaaacaataacaatggtaagaatgaaaagaagttga 628
Query: 481 agagacgcaggtagcctgcctttgtgctttcttgctgcttgcagaatttcac---cacca 537
||||||||||||||||| ||| |||||||||| ||||||||||||||||||| |||||
Sbjct: 627 agagacgcaggtagcctacctatgtgctttctggctgcttgcagaatttcactaccacca 568
Query: 538 ccaccaccaccatcaccaccccactctttcctgcagttaacacagagctc 587
|||||||||||| |||||||| ||||||||||||| ||||| ||||||
Sbjct: 567 ccaccaccaccaccaccaccctgctctttcctgcagctaaca--gagctc 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_a10.g1 MSMg01no079_a10.g1 CHROMAT_FILE:
MSMg01no079_a10.g1 PHD_FILE: MSMg01no079_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:32 2005
(471 letters)
>mm_chr4_15217287_15218157
Length = 871
Score = 874 bits (452), Expect = 0.0
Identities = 464/468 (99%), Gaps = 2/468 (0%)
Strand = Plus / Plus
Query: 5 cacacgaaagtataaatatttaagaacagcaagaatgtgaagggcaggaagcaaagtatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cacacgaaagtataaatatttaagaacagcaagaatgtgaagggcaggaagcaaagtatt 264
Query: 65 aaaccagcgctggagcaatacataagatgctgtgttgtaaaggcatcaatggatttgtat 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 aaaccagcgctggagcaatacataagacgctgtgttgtaaaggcatcaatggatttgtat 324
Query: 125 ataaaaagcataggtttcatatttatggataagaaagtgctgaagtagcaactgtctaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaaaagcataggtttcatatttatggataagaaagtgctgaagtagcaactgtctaaa 384
Query: 185 ttttgaattgcaaacaatagtttggggaaattgcagaatgccaaaaccattagtgtaaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttgaattgcaaacaatagtttggggaaattgcagaatgccaaaaccattagtgtaaag 444
Query: 245 agtaatcagggaagaagtaatggccagaaatcagccatgacagtaaatattaggaagtca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtaatcagggaagaagtaatggccagaaatcagccatgacagtaaatattaggaagtca 504
Query: 305 atgtgcaaaataaatttggcaaatgtacctacagtgcacg-tgggcagatgaggaaggct 363
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct: 505 atgtgcaaaataaatttggcaaatgtacctacattgca-gatgggcagatgaggaaggct 563
Query: 364 ctgggatagctcacggtctctacaatggatggtggcctaactaagagcagtttaaggcct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgggatagctcacggtctctacaatggatggtggcctaactaagagcagtttaaggcct 623
Query: 424 gagagctgaaagggaggtggaaatgctgctggggtgtggtgaccaagg 471
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gagagctgaaagggaggtggaaatgctgctggggtgtggtgaccaagg 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
