Query= MSMg01no079_e05.b1 MSMg01no079_e05.b1 CHROMAT_FILE:
MSMg01no079_e05.b1 PHD_FILE: MSMg01no079_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:50 2005
(573 letters)
>mm_chr4_83009578_83010550
Length = 973
Score = 843 bits (436), Expect = 0.0
Identities = 449/458 (98%), Gaps = 8/458 (1%)
Strand = Plus / Minus
Query: 116 cctgtgaaattaagatgcttctatacaaaaaaggaaacctttctatacagaaaatgaagg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 973 cctgtgaaattaagatgcttctatacaaaaaaggaaacctttctatacagaaaatgaagg 914
Query: 176 aatggcttatagaacaagagaaagtcattgaaagctgcatatatgccaggggattaatat 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 aatggcttatagaacaagagaaagtcattgaaagctgcatatatgccaggggattaatat 854
Query: 236 ctagaatacaccaaaaaacaaacaaacaaacaaacaaacaaactcaaggaactaaacaac 295
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 853 ctagaatacaccaaa--------aaacaaacaaacaaacaaactcaaggaactaaacaac 802
Query: 296 aagaaagcaaacaactcaaccaagtgaactagtgaacaggcagttttcaatcacagagga 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagaaagcaaacaactcaaccaagtgaactagtgaacaggcagttttcaatcacagagga 742
Query: 356 gtgctaaggaaaatgtgcctcagccactcaatgcatttctatttaataaacaattatgtg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgctaaggaaaatgtgcctcagccactcaatgcatttctatttaataaacaattatgtg 682
Query: 416 atgtcatttgtctgaaagtagatgcaattgaaaacaatcttattaaagattaaagccatt 475
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgtcatttgtctgaaagtggatgcaattgaaaacaatcttattaaagattaaagccatt 622
Query: 476 tgcagaaagacaaattgcacatctagtgttttctggactttgactttgtgtagacatgtg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcagaaagacaaattgcacatctagtgttttctggactttgactttgtgtagacatgtg 562
Query: 536 aaatatgacttgagagttgaaggaacacttcccgaggg 573
||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatatgacttgagagttgaaggaacacttcccgaggg 524
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_e05.g1 MSMg01no079_e05.g1 CHROMAT_FILE:
MSMg01no079_e05.g1 PHD_FILE: MSMg01no079_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:51 2005
(162 letters)
>mm_chr4_82929977_82930538
Length = 562
Score = 296 bits (153), Expect = 5e-85
Identities = 159/161 (98%)
Strand = Plus / Plus
Query: 1 ttaaaaatgccgtgaggcagagctcactttctgggggctcacagtcgctctgatctgctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaaatgccgtgaggcagagctcactttctgggggctcacagtcgctctgatctgctg 260
Query: 61 agaaggctagctgaagccaatatcacccagcaggagctgaaggtctaggataaagggcac 120
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 agaagactagctgaagccaatatcacccaggaggagctgaaggtctaggataaagggcac 320
Query: 121 aagctatttctgaatgaacatcactttattcatctttaaag 161
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagctatttctgaatgaacatcactttattcatctttaaag 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space: 85316
Effective search space used: 85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
