BAC Information

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BAC

Clone NameMSMg01-079G08
Chromosome4 (Build37)
Map Location 124,692,553 - 124,692,683
singlet/doubletsinglet
Overlap genenone
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1
Downstream geneGnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079G08.T7 (MSMg01no079_g08.b1)MSMg01-079G08.TJ (MSMg01no079_g08.g1)
ACCAG300485AG300486
length742700
length of high quality
(start - end)
205 (45 - 249)132 (74 - 205)
definitionCHROMAT_FILE: MSMg01no079_g08.b1 PHD_FILE: MSMg01no079_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:01 2005CHROMAT_FILE: MSMg01no079_g08.g1 PHD_FILE: MSMg01no079_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTATTTCCTGATCCCTGTGACTTCCATCTTCTTGTCCTGTTTCCC
GGGTCTGAACCTGTGCCTGCCTGGAGGCAGTTCTGTGAATCTCCTTCTCC
CTGAGTTTGTGTGTGTGTCTATCTGCTGTAGGAGCTATGTCTGCCTATCG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTT
TTTCTGTTATTTTTCTTTTTTCCACTTTTTTTTTTTTTTCTCTTTTTTCT
TCTTTTAGTTCTACTTTTTTTTTTTCTTCCTTTTTCTCTTTCCTTTTTTT
TTTCTTTTTCTTTTTTTACTTTTCCTCCTTTTCTTTTTTTTTTCCCCTTT
TCTCTTTTTATTTTCATTTCTCCCCTTTCTCTTTTTTTCCCTCTTTCTCC
TTCCCCTCCCTTTTCTTTTTTCCTCTTTTTTTATATTCTATTTCTTTCTT
TATTTCTCTCTTTCTTTTTTCTGTTTACTTATTTCTTTTTTTCTTTAACT
ATTCTCCCTCTTTTTCTTTTTTTTTCTTTTTTTTCCCTTCCTTATATTTC
CTTTCCTTTTTCCATATTCTCTTTTCTCTCTTCTTTCCTCTTTTTTACTC
TTTTTTCTTCTTCTCCCCTTATTTTTCTTTCCCTCTTTTCTTTTTCTACA
CCCCCGTTTACTTTCTCCCATACTCTCACTGCTATTTTTTTT
AATGAATGTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGCCAGGGCCAGCACTAAGGCCCCG
CTCCACATCCTTAACCCAGGGCCAGGCCCGGAGGTGTTGGCTTTTTGCCT
CAGAACCCTCCAGCTATGGGTCTGATGTGCAGCGGAAACCTTCATGGTGG
TAGAGAATGGGGAAATGGGCTTCAAGAACAGGTTCTATCTGGCAAGATTA
ACTGAATTCCTTGGAAAGAGCAGGCGCACGCTCTGTTGTACGTGGAGGTG
ACAAGAACAAAAGCCCTATTCTAAGGAGGAGGTGACCTGAATACAGATCA
CCTTGAGGGATGCTGAGAGGCAATCAGCCTTGAAGGATGCTGAGGTGTAC
ATCTCGGCTGGCCGCCCCTGATTTGCTGCGTTCTACCTCCCGGCTCTTCC
AGAGAATGAACCAATTACAGGGAAGACTAAACTTGTGCTTCCCCTGTGGT
AGAGCCCCCTCATGCGTAGTCAGTGCACTGTTTCTGCCCGCACCTGTGTC
TGTTTTGCTGGGATGCCCGATTATTTGTGTTCGTGACCTCCCACTTATCT
TTGTCTACCAACCCGCCGCTTGACCATTGTGTTTCCGTATCACGCTTGTA
TACCGCCTCTTGGTTTTTCGCCCCTTCTTCCCCCCAATTTTCACCCCTAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_g08.g1 MSMg01no079_g08.g1 CHROMAT_FILE:
MSMg01no079_g08.g1 PHD_FILE: MSMg01no079_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:01 2005
         (132 letters)



>mm_chr4_124692353_124692883
          Length = 531

 Score =  224 bits (116), Expect = 1e-63
 Identities = 128/132 (96%), Gaps = 1/132 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagccagggccagcactaaggccccgctccacatccttaacccagggccaggcccggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 agagccagggccagcactaaggccccgctccacatccttaacccagggccaggcccg-ag 259

                                                                       
Query: 61  gtgttggctttttgcctcagaaccctccagctatgggtctgatgtgcagcggaaaccttc 120
           ||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 gtgctggctttttgcctcagagccctccagctatgggtctgatgtgcagtggaaaccttc 319

                       
Query: 121 atggtggtagag 132
           ||||||||||||
Sbjct: 320 atggtggtagag 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 531
Length adjustment: 8
Effective length of query: 124
Effective length of database: 523
Effective search space:    64852
Effective search space used:    64852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)