Query= MSMg01no079_h09.b1 MSMg01no079_h09.b1 CHROMAT_FILE:
MSMg01no079_h09.b1 PHD_FILE: MSMg01no079_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:06 2005
(323 letters)
>mm_chr4_83496928_83497649
Length = 722
Score = 487 bits (252), Expect = e-142
Identities = 303/320 (94%), Gaps = 1/320 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaggacatgtccttggttatgctgacgtgtaactatataaatattagttgggat 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggacatgggattggttatgctgacgtgtaactatataaatattagttgggat 263
Query: 64 gttggtggtgtttgtactatcctcagagcgcttacaggatgttctcctaagagatgaata 123
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 gttggtggtggttgtactattctcagagcgcttacaggatgttctcctaagagattaata 323
Query: 124 tggtttgaaacccttgtaagtggtctgcctatattagaaattaacattcctgcatatcac 183
|| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 tgatttgaaacccttgcaagtggtctgcttatattagaaattaacattcctgcatatcac 383
Query: 184 ataagggaaccaccattgttagctaagtgatttgttgcggaatatgttctccattgctta 243
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 ataagggaaccaccattgttagctaagtgatttgttgtggaatatgttctccattgctta 443
Query: 244 tggtctgaacacattccacaaacacggccctatatgttttgagtgttgctcatctgaagg 303
||||||||| |||||||||| ||| | ||||||||| ||||||||||||||||||||||
Sbjct: 444 tggtctgaagacattccacagacatgaccctatatggcttgagtgttgctcatctgaagg 503
Query: 304 tgattgctcctgattcttag 323
|||| |||||||||||||||
Sbjct: 504 tgat-gctcctgattcttag 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space: 223882
Effective search space used: 223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_h09.g1 MSMg01no079_h09.g1 CHROMAT_FILE:
MSMg01no079_h09.g1 PHD_FILE: MSMg01no079_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:06 2005
(181 letters)
>mm_chr4_83649451_83650031
Length = 581
Score = 335 bits (173), Expect = 1e-96
Identities = 179/181 (98%)
Strand = Plus / Minus
Query: 1 ctctcctccaatcccctaacaaacatttccccaaatttcattggccaaagtcaatctaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcctccaatcccctaacaaacatttccccaaatttcattggccaaagtcaatctaac 322
Query: 61 actacatgctagaatcaaaccaaagcccctgcctcagaaactgcatacctgacatacagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actacatgctagaatcaaaccaaagcccctgcctcagaaactgcatacctgacatacaga 262
Query: 121 aacatgtgtactcaactcctgcactgtatactctgagggcgttcaagagctgcactgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aacatgtgtactcaactcctgcactgtatactctgagggcgttcaagagctgcaccgagg 202
Query: 181 a 181
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space: 99129
Effective search space used: 99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
