ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGCAATTTCACCCTTTTGTCTACCCTTACAGTATCTCAGCTCAAATTT
ATATTCTGCCAGACAATAAATGAATTAAAAGGTTTACTGAAAGTTTCATT
ACAATATGAAGCTTCTATCAGAAAACCTGTAACAGTATTTTACAATGAAA
CAGTGTTTTGGGTCATCACCCAAAATATGCTCTCATGCTTTGCAAGTCTA
ATAAATTTAATGGCTCTTCAAGCTGGACTCAGTGTGCATTCTTTCTTTGG
TGCCTTCCTCGCTCTATGTAAAATGGATAGATGCTTGTTTCATGTCTCCA
TAGTCAAAGCTAACAAGAATTCATTGTTGTTTCATGCTATGTTTTAAATG
CCTAGCTTTCCATGCAAGAAAACAAACAAACAAACAAAACTTTCTAACTT
AAGGAGTGAGAGGGAATTTTGTAGATGTTCTATGGTTCTTCTGAACTCCT
GAGTAACCCTTTATACAAAAGTGAAGAGAAAAAAACAAACAACAGCAACT
AAATGAAGTCATTAATTGGGCTTAAGGTTTATTTTCCCACTCTTAAAGTT
GAGACAGAAGTTAGCTTTCAAACTCCATGGATTGTCAGAAACTAAATTTT
CTGTGGTTTAACAAATTGTAATTTCAAGATCAATCACCTTACACAATCCT
GTAT

TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAATGGCTGAGAAGCACCTGAAAAA
ATGTTTAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGTTGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCC
TCAGAAAATTGTACATAGTAGTACAGGAGGATCCAGCAATACTTCTCCTG
GGCATATATCCAGAAGATGCCTCAAGTGGTAAGAAGGACACATGCTCCTC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAAAAATGTGGTACATTTACACAA
TGGAGTACTACTCAGCTATGAAAAAGAATGAATTTATGAAATTCCTAGGC
AAATGGATGGATCTGGAGGGTATCATCCTGAGTGAAGTAACCCAATCAGA
AAGGAACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAA
ACTTAGTATAGTGAGATATAAGGTACAATTTGCAAAACACATGACACTGA
AC

Query= MSMg01no080_f07.b1 MSMg01no080_f07.b1 CHROMAT_FILE:
MSMg01no080_f07.b1 PHD_FILE: MSMg01no080_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:12 2005
         (519 letters)



>mm_chr4_68787369_68788281
          Length = 913

 Score =  928 bits (480), Expect = 0.0
 Identities = 505/516 (97%), Gaps = 6/516 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagcaatttcacccttttgtctacccttacagtatctcagctcaaatttatat 63
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 713 ggaattccagcaattttacccttttgtctacccttacagtatctcagctcgaatttatat 654

                                                                       
Query: 64  tctgccagacaataaatgaattaaaaggtttactgaaagtttcattacaatatgaagctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tctgccagacaataaatgaattaaaaggtttactgaaagtttcattacaatatgaagctt 594

                                                                       
Query: 124 ctatcagaaaacctgtaacagtattttacaatgaaacagtgttttgggtcatcacccaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ctatcagaaaacctgtaacagtattttacaatgaaacagtgttttgggtcatcacccaaa 534

                                                                       
Query: 184 atatgctctcatgctttgcaagtctaataaatttaatggctcttcaagctggactcagtg 243
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 533 atatgctctcatgctttgcaagtctaataaattcaatggctcttcaagctggactcaatg 474

                                                                       
Query: 244 tgcattctttctttggtgccttcctcgctctatgtaaaatggatagatgcttgtttcatg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgcattctttctttggtgccttcctcgctctatgtaaaatggatagatgcttgtttcatg 414

                                                                       
Query: 304 tctccatagtcaaagctaacaagaattcattgttgtttcatgctatgttttaaatgccta 363
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 413 tctccatagtcaaagctaacaagaattcattgttgtttcatgct--gttttaaatgccta 356

                                                                       
Query: 364 gctttccatgcaagaaaacaaacaaacaaacaaaactttctaacttaaggagtgagaggg 423
           ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||
Sbjct: 355 gctttccatgcaagaaaacaaacaaacaaa----actttctaacttaaggagtgagaggg 300

                                                                       
Query: 424 aattttgtagatgttctatggttcttctgaactcctgagtaaccctttatacaaaagtga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aattttgtagatgttctatggttcttctgaactcctgagtaaccctttatacaaaagtga 240

                                               
Query: 484 agagaaaaaaacaaacaacagcaactaaatgaagtc 519
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 239 agagaaaaaaacaaacaacagcaacaaaatgaagtc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 913
Length adjustment: 10
Effective length of query: 509
Effective length of database: 903
Effective search space:   459627
Effective search space used:   459627
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)