BAC Information

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BAC

Clone NameMSMg01-080G07
Chromosome4 (Build37)
Map Location 152,370,118 - 152,370,361
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2, LOC100042028, Nphp4, LOC667039, Gm833
Downstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080G07.T7 (MSMg01no080_g07.b1)MSMg01-080G07.TJ (MSMg01no080_g07.g1)
ACCAG301247AG301248
length698715
length of high quality
(start - end)
244 (70 - 313)34 (205 - 238)
definitionCHROMAT_FILE: MSMg01no080_g07.b1 PHD_FILE: MSMg01no080_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:17 2005CHROMAT_FILE: MSMg01no080_g07.g1 PHD_FILE: MSMg01no080_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGCGGCGCTAAACGACTCCTAAATCGNTATCGTCCGCGGAATTC
TTCTTCTTACAAAAGAATCTGTCGGGAGTTGTGGGAGGTGAGGAAGTCAA
CCTTATGAAGGAAAAACCGGGATGGAGAGCCAGGTACCACAGGCTCCTGT
GGCTCCTGGAAGAGTCTTGACCTGCCACACACAGCATTAGATCTGAGATG
GCTCCTGGTATAATAGTGACAGAAAAAATAAAACACAACAAAACCTGAGA
CCAGGGCAGTGACTGCTTCTCCTGTCTTCACAGAAGTCCTCACAGGTGAG
GAAGCTCCTCCAACTCTCTCATGTTACCTCATCAGGGAGGGCTTTCATTG
GAGCACATGGATGCCGCGACAAGATAGGACTGGCCAAGAATTTGGGGTTT
TGTGATTGGCTCCCATATTATATGTAATCTCATGGGCTGAGCAGCTCAGA
TCAATGCCCTCATGCTGGTCCCTATAGTTGAAGTTCCTGACACTTGTCAC
CTGATTTCACTGTCTCCTACCCCTGATTCCCCGCTCCCATTCCCCCATGA
TATTTTGTCACATTTATGATTACAATATGCTTGTGTTTTCATCTCCGACC
CGCTTTCTAATGCCCTGACACCGGCTCCAACTTGAACTAGATTTTTTTTA
TGTCTCTTTTTCATTTCTGTAAAATTATCCTTTTACGTGTCCACTATT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTGTGCAGTGTGAAGATCTGGGTGGTCTCAG
GTGCAGGGTAGGAAGGATGCATAACCCAGAGGGGGTGCACTGTGGGCAGC
TGCGGAGGGATGGGACCAGGTAGGCAGTGACCTGGATTCTCAGTGTACTA
GGGCCATGTTTCCTGACTGACGATTGTCGGCTCTGCTGGAGACAGTGTGT
GTTCTTACTAGCTCATGCTAATATCGCAAGCGTCTAATGCGTCTGATGGA
AGGTCTCTGGGAGGCCACTGAGTCTCCTCCCGATGTTTCCGCAGCACTGA
AATTGTTGCCAAATCGAAAGTCTGAGCGGAGGATGCTGGCAGCGCTTTCA
CTCAAGCTCGGTGCACGCATAAGATGAAGACAGCCCCAGTGGTTCTCATG
CCCCAGATGTATCGACCAATCCTGTGTTGTATCCTGATTCTCTGTCCCAT
ATTCCCTGCCTGTACATAGTCCCCCTTATCTAAATGCCATGCACCACCGC
GTGTGTCTCCGCCTTTTTCGCACCCCCTTATTTATCATGACCTTACCCAT
CTCGACCCACCCCGCTCCTTACAATATATTTTATCCCACCCTTTTTTCCG
TTTACTGTCTTTTTACCCCTGACCTATGTTGGTTTATTGTTTTGACTATT
CCCCCCTCCCTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_g07.b1 MSMg01no080_g07.b1 CHROMAT_FILE:
MSMg01no080_g07.b1 PHD_FILE: MSMg01no080_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:17 2005
         (244 letters)



>mm_chr4_152369918_152370561
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcgggagttgtgggaggtgaggaagtcaaccttatgaaggaaaaaccgggatggagag 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 444 tgtcgggagttgtgggaggtgaggaagtcaaccttatgaaggaaaaagtgggatggagag 385

                                                                       
Query: 61  ccaggtaccacaggctcctgtggctcctggaagagtcttgacctgccacacacagcatta 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccaggcaccacaggctcctgtggctcctggaagagtcttgacctgccacacacagcatta 325

                                                                       
Query: 121 gatctgagatggctcctggtataatagtgacagaaaaaataaaacacaacaaaacctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatctgagatggctcctggtataatagtgacagaaaaaataaaacacaacaaaacctgag 265

                                                                       
Query: 181 accagggcagtgactgcttctcctgtcttcacagaagtcctcacaggtgaggaagctcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accagggcagtgactgcttctcctgtcttcacagaagtcctcacaggtgaggaagctcct 205

               
Query: 241 ccaa 244
           ||||
Sbjct: 204 ccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)