Query= MSMg01no080_i03.b1 MSMg01no080_i03.b1 CHROMAT_FILE:
MSMg01no080_i03.b1 PHD_FILE: MSMg01no080_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:26 2005
(638 letters)
>mm_chr4_19529241_19530281
Length = 1041
Score = 1011 bits (523), Expect = 0.0
Identities = 616/663 (92%), Gaps = 31/663 (4%)
Strand = Plus / Plus
Query: 7 gaattcatcatttaactatgtttagtttgtgtaaaaag-aaccattcttacttgtaagac 65
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 188 gaattcatcatttaattatgtttagtttgtgtaaaaagcaaccattcttacttgtaagaa 247
Query: 66 acgtcatagctgaatcacacatgatcacacatgatcttaactgtgtgccagggtagtttg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acgtcatagctgaatcacacatgatcacacatgatcttaactgtgtgccagggtagtttg 307
Query: 126 gtacttcctctgcatagcaaccagaaaattattagaagtgattctcact----------- 174
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtacttcctctgcatagcaaccagaaaattattagaagtgattctcactataaaatccca 367
Query: 175 -------attatttaatagttatattcagcctatgatactctccctgctgaccttattat 227
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 368 gtctttgattatttaatagttatattcagcctatgatactctccctgctgaccttatcat 427
Query: 228 ttgttttatgatcatttactctctgaaacctttaatactaagaatcaaccttc-aaaact 286
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 428 ttgttttatgatcatttactctctgaaacctttaatactaagaatcaaccttcaaaaact 487
Query: 287 gttttctaagttcctgagtctaattcattctattttatttgtattctttctattcttaac 346
||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 488 gttttctaaattcctgagtctaattcgttctattttatttgtattctttgtattcttaac 547
Query: 347 aggccttaagatactttcacaaagcagaagaaggtaaaatacttttactccagctattaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aggccttaagatactttcacaaagcagaagaaggtaaaatacttttactccagctattaa 607
Query: 407 tataatattgtctaagtgcttactatgtcatagaatattttaaatcaagaatttgctgta 466
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tataatattgtctaagtgtttactatgtcatagaatattttaaatcaagaatttgctgta 667
Query: 467 tctttcacattggataatgtaaaacaaatttaaactaaaaagaaaaaaat--gtatgtat 524
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 668 tctttcacattgtataatgtaaaacaaatttaaactaaaaagaaaaaaaaaagtatgtat 727
Query: 525 ttgggtattccttctgaatgtatgtcagt--at-act------cttggagatcattagaa 575
|||||||||||| |||||||||||||||| || ||| |||||||| || ||||
Sbjct: 728 ttgggtattcctcctgaatgtatgtcagtgtatgactggtgctcttggagaccagaagaa 787
Query: 576 ggcatcctctcaggactggggttaacagacagttgtgagttggcatgttggtgttgggga 635
|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct: 788 ggcatcctctcaggactggggttaacagacagttgtgagttgccatgttggtgctgggaa 847
Query: 636 ttc 638
|||
Sbjct: 848 ttc 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1041
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1031
Effective search space: 647468
Effective search space used: 647468
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_i03.g1 MSMg01no080_i03.g1 CHROMAT_FILE:
MSMg01no080_i03.g1 PHD_FILE: MSMg01no080_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:26 2005
(555 letters)
>mm_chr4_19626483_19627433
Length = 951
Score = 797 bits (412), Expect = 0.0
Identities = 424/430 (98%), Gaps = 4/430 (0%)
Strand = Plus / Minus
Query: 126 ttgtgtgaatgggtgttttgcttgcatgaatgtgtgtataccatgtgtgcctggtgtcca 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 ttgtgtgaatgggtgttttgcttgcatgaatgtgtgtataccatgtgtgcctggtgtcca 892
Query: 186 cagaaagcagaagagaatgtcaggtcccctggaactgaggtacagaggactgtgagctac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 cagaaagcagaagagaatgtcaggtcccctggaactgaggtacagaggactgtgagctac 832
Query: 246 catgtgggtgctaggaactcaacctgggtcctctgtaagggcagccggtactcttactac 305
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 catttgggtgctaggaactcaacctgggtcctctgtaagggcagccggtactcttactac 772
Query: 306 tgaaccatctctccagctccagtcagatcttatattgtaacaacagacttttacaatgag 365
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgaaccatctctccaactccagtcagatcttatattgtaacaacagacttttacaatgag 712
Query: 366 ggcagttcctggaaaaaccaaaggtatggttgaggttactgaaaatatccattgtggtgg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ggcagttcctggaaaaaccaaaggtatggttgaggttactgaaaatatccattgtggtgg 652
Query: 426 aaaacaaatggagccctgctgccttgtaagctgaagtgaggagcccattgttactgtgtt 485
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaaac----ggagccctgctgccttgtaagctgaagtgaggagcccattgttactgtgtt 596
Query: 486 tcactgaggaaaaggagatgacaatagaccatttctttttgtcctgtgacttgtgaaata 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcactgaggaaaaggagatgacaatagaccatttctttttgtcctgtgacttgtgaaata 536
Query: 546 tccagaatgc 555
||||||||||
Sbjct: 535 tccagaatgc 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 951
Length adjustment: 10
Effective length of query: 545
Effective length of database: 941
Effective search space: 512845
Effective search space used: 512845
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
