Query= MSMg01no080_k04.b1 MSMg01no080_k04.b1 CHROMAT_FILE:
MSMg01no080_k04.b1 PHD_FILE: MSMg01no080_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:36 2005
(525 letters)
>mm_chr4_18616756_18617678
Length = 923
Score = 901 bits (466), Expect = 0.0
Identities = 509/532 (95%), Gaps = 19/532 (3%)
Strand = Plus / Minus
Query: 1 tcaatcttctgaaaatcaatgtattatttttgggggaatttataccatgcatttgatgat 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 522 tcaatcttctgaaaatcaatgtattatttttgggggaatttat---atgcatttgatgat 466
Query: 61 atacattctttatactcata-attcatatcatcatatcctccatcacttccattctcact 119
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 465 atacattctttatactcatacattcatatcatcatatcctccatcacttccattctcact 406
Query: 120 aaattttatgttgtcttttttactattattcttttaaacatatcaagtactggtggaact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaattttatgttgtcttttttactattattcttttaaacatatcaagtactggtggaact 346
Query: 180 atctgcatacttttgttgcgtggtctttcacttgaatgtgatgaacttactatgtgccac 239
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atctgcatacttttgttgcatagtctttcacttgaatgtgatgaacttactatgtgccac 286
Query: 240 atctata---ttttttt---acagacttttcttcttttaacagatatttgttgcttgact 293
||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atctataaag------taaaacagacttttcttcttttaacagatatttgttgcttgact 232
Query: 294 gaccagcatgcgtgtgtacacatagtcattcaaatattataaaataattttaaaatactt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gaccagcatgcgtgtgtacacatagtcattcaaatattataaaataattttaaaatactt 172
Query: 354 tggctgatataatacaaattgcattatttctccacagagacaactctgaatccaaatagg 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tggctgatataatacaaattgcattatttctccacagagacaactctgaatccaaatagg 112
Query: 414 caaacattaggctagtgcaaagagaggcaaagcactctcacatgccttttgccttatttt 473
||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 111 caaacattaggttagtgcaaagagaagcaaagc---ctcacatgccttttgccttatttt 55
Query: 474 attctgttcttagatattccttcttgagcaattccagacattgctttccata 525
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 attctgttcttagatattccttcttgagcaattccagacattgctttccata 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 923
Length adjustment: 10
Effective length of query: 515
Effective length of database: 913
Effective search space: 470195
Effective search space used: 470195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_k04.g1 MSMg01no080_k04.g1 CHROMAT_FILE:
MSMg01no080_k04.g1 PHD_FILE: MSMg01no080_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:36 2005
(522 letters)
>mm_chr4_18511690_18512612
Length = 923
Score = 942 bits (487), Expect = 0.0
Identities = 514/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 1 caatcagtaagtctttttgacaaaaaa-gctatactctactaacttctcttgtggctagt 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 caatcagtaagtctttttgacaaaaaatgctatactctactaacttctcttgtggctagt 260
Query: 60 aaataacagatacaattaataaggacaacgtaccaaaactattgcaaagaaatgcaatat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaataacagatacaattaataaggacaacgtaccaaaactattgcaaagaaatgcaatat 320
Query: 120 atgcatgtccagcaaatgaaaatattcataatcaaatgaaccagcaaaatacattgagca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 atgcatgtccagcaaatgaaaatattcataatcaaatgaaccagcaaaatacattgacca 380
Query: 180 ttttgatgagtatatttgatggagatagacttttacttgtgccattttgtagtttattgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgatgagtatatttgatggagatagacttttacttgtgccattttgtagtttattgt 440
Query: 240 ctgttggtaacaataaccactctaatttggatgttacatatagtatatgtacaccaaatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ctgttggtaacaataaccactctaatttggatgttacatatagtatatgtacagcaaatc 500
Query: 300 attacataggttttgggcgccagatgtgggggaataaagggaatgggagaaaacctgcgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attacataggttttgggcgccagatgtgggggaataaagggaatgggagaaaacctgcgc 560
Query: 360 cccaccagtgtttcggtgctatgggcgggcagactctacaggactgccaggctctgggtg 419
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 cccaccagagtttcggtgctatgggcgggcagactctacaggactgccaggccctgggtg 620
Query: 420 ggtgtctggctgtgggaagccacagaaccttagctcggtggtgggtggacaaagggcagt 479
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 621 ggtgtctggctgtgggaagccacagaacctcaactcggtggggggtggacaaagggcagt 680
Query: 480 cttaagtaacaagttttcagtcttgggcatcccagactctgtg 522
||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 cttaagtaacaggttttcagtcttgggcatcccagactctgtg 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
