Query= MSMg01no080_l17.b1 MSMg01no080_l17.b1 CHROMAT_FILE:
MSMg01no080_l17.b1 PHD_FILE: MSMg01no080_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:44 2005
(611 letters)
>mm_chr4_19432115_19433125
Length = 1011
Score = 1073 bits (555), Expect = 0.0
Identities = 588/607 (96%), Gaps = 14/607 (2%)
Strand = Plus / Plus
Query: 5 gaattcttttatgcccgaagggaaagaccactcaggcaatccctgcaagaccaggacctg 64
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttaagccagaagggaaagaccactcaggcaatccctgcaagaccaggacctg 264
Query: 65 cctttcttttcccaccaaaagaagagacaccccgaatgcttaaagttctcctaggaaaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctttcttttcccaccaaaagaagagacaccccgaatgcttaaagttctcctaggaaaca 324
Query: 125 caggaaaggtggaccttggaagactccttaaaggaaagagaaaaacaaccactcaggtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggaaaggtggaccttggaagactccttaaaggaaagagaaaaacaaccactcaggtaa 384
Query: 185 caaggctgacttgaggcagtgactgggaggctagcagcaggagtggggattgtcacatgg 244
|||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 385 caaggctgac------------ct--gaggctagcagcaggagtggggagtgtcacatgg 430
Query: 245 catacatccaggccagctctaggtcagacatggagggaatttggatgaatctgacactaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 catacatccaggccagctctaggtcagacatggagggaatttggatgaatctgacactaa 490
Query: 305 caatggagctttgggttggcacttattatttaaaccttctctgctttctttcattacatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caatggagctttgggttggcacttattatttaaaccttctctgctttctttcattacatc 550
Query: 365 aaatcacccgtggttcaatttaaattaatgtatgtattcataaatacactcaaactcact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaatcacccgtggttcaatttaaattaatgtatgtattcataaatacactcaaactcact 610
Query: 425 tgttcacgagctctatatgtgtgaagagccttacctactataatttattggtaccgctcc 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgttcacaagctctatatgtgtgaagagccttacctactataatttattggtaccgctcc 670
Query: 485 cgaatcagcacatttatttttgtgtcagtcatgccatgcaaatatgaaagaaagaataaa 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 671 cgaatcagcacatttatttttgtgtcagtcatgccatgcaaatatgaaaggaagaataaa 730
Query: 545 aggaggaaatctggtaggtgtatttctgctaagttcacccagtgccatctctttgttacc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aggaggaaatctggtaggtgtatttctgctaagttcacccagtgccatctctttgttacc 790
Query: 605 atggctt 611
|||||||
Sbjct: 791 atggctt 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_l17.g1 MSMg01no080_l17.g1 CHROMAT_FILE:
MSMg01no080_l17.g1 PHD_FILE: MSMg01no080_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:44 2005
(557 letters)
>mm_chr4_19500880_19501838
Length = 959
Score = 1031 bits (533), Expect = 0.0
Identities = 552/559 (98%), Gaps = 2/559 (0%)
Strand = Plus / Minus
Query: 1 cagtctagtctgaactactgggtgagactgttagactctgcatcttaagaattcagatag 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 663 cagtctagtctgaactactgagtgagactgttagactctgcatcttaagaattcagatag 604
Query: 61 ataccccagttctttcctgggtaggaacacataaaaaataagacaggttatatcc--gag 118
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 603 ataccccagttctttcctgggtagggacacataaaaaataagacaggttatatccgagag 544
Query: 119 agagagagagaaatcagattttaatttaacttacatttgttgtcttaaattacttaaata 178
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 543 agagagagagaaatcagattttaatttaacttttatttgttgtcttaaattacttaaata 484
Query: 179 cccatttactaaaggtgctatgtggtgctgggacccttcatgtcctttaaccgttatgct 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cccatttactaaaggtgctatgtggtgctgggacccttcatgtcctttaaccgttatgct 424
Query: 239 attcatcgttaggtgtagataggaactgcaagttataaatgaggaagatgtgcttcagta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 attcatcgttaggtgtagataggaactgcaagttataaatgaggaagatgtgcttcagta 364
Query: 299 cgagtttgaattctccagaatcaaatcgctcatgcccgtgagaaaagggatagaacatgt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cgagtttgaattctccagaatcaaatcgctcatgcccgtgagaaaagggatagaacatgt 304
Query: 359 gtttggagcaagcttcccaggtgtagagacatgagacattgcttttgctattacatacat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtttggagcaagcttcccaggtgtagagacatgagacattgcttttgctattacatacat 244
Query: 419 catgttcatttcagtgatgatggagaaatatgcctgtaaatatttttttcaggaagtaac 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 243 catgttcatttcagtgatgatggagaaatgtgcctgtaaatatttttttcaggaagtaac 184
Query: 479 agaatcttggggttcacaaactttgcactaaactttggcaaatccaaaagacacactctc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 agaatcttggggttcacaaactttgcactaaactttggcaaatccaaaagacacactctc 124
Query: 539 tttgctttgttttgaagca 557
|||||||||||||||||||
Sbjct: 123 tttgctttgttttgaagca 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 959
Length adjustment: 10
Effective length of query: 547
Effective length of database: 949
Effective search space: 519103
Effective search space used: 519103
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
