BAC Information

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BAC

Clone NameMSMg01-080L24
Chromosome4 (Build37)
Map Location 131,102,472 - 131,102,699
singlet/doubletsinglet
Overlap genenone
Upstream gene2610200G18Rik, Pum1, LOC622577, Sdc3, Laptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832
Downstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080L24.T7 (MSMg01no080_l24.b1)MSMg01-080L24.TJ (MSMg01no080_l24.g1)
ACCAG301512AG301513
length718708
length of high quality
(start - end)
228 (64 - 291)250 (65 - 314)
definitionCHROMAT_FILE: MSMg01no080_l24.b1 PHD_FILE: MSMg01no080_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:45 2005CHROMAT_FILE: MSMg01no080_l24.g1 PHD_FILE: MSMg01no080_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCCTAATACACTCCTATATTTCGAGAATCCGCGGAATTCATGTC
TTTACTTCTGCCAGTCAGGCACTCTGCCACTGAATGGAAAGCCCTGGNCC
TTTGAAATCCCTCTCTTCTGCTCTGTGTCTTCCTCCTTCCTGGCCCTTTG
AGCTAGCCTCCGCCCTGATGTCTCTATCTCCAGTCCAGCCCCACTGTGGT
AGTCAAAACACCCTAGTGTCCAACACATGGCCATGCCTGAGCACAAGAGC
TCACCTTTGTGTACAGTCACCTTTGCCCTTGTCTCCTGAGACCAGACCTG
GTGGGGAGGTGCTCATTGTTCCTTCTCTCATTTCTCACCCTCCTTCAACT
ACCCATTCCCTCTATCTTTTCTTCACCCACTCCCTTTTCTTTCCCTCTCC
CTCCCCTTTTTCACCCCCTTCCCCCTCTTTTCCCTCTTATCTATTCTCTC
CCCCTTTTTTTCCCCCCTTCCTTTTTCCCCTCCCCACCCCTCTCCCCCTT
TATTTATTCCCCTTTCCTTCCCCCTTTTCACTCCCCCCATTTTTCCCCCA
ACTCCCCCTTCTTTCCTTTTCCTTTTTTCCCCCCCTTCATCCCCCTTTAC
CCCACCTATTCCCCCCCTTTCCACTTTCCCCTTCCCTCTTTTTTTTTTTC
CCCCCCCCTCCCCCCCTTTCCCTTTTTTTCCTTCCCATTCTCTTTTTTCC
CTCCCCCCCCCCCTTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTTAGTGGGGTT
ATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATA
TTAGTTCCTTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGCTTTCTCCTCCTTTTAAAGAGCAGATTACTAAGAGATAACAACCA
AACATGACAAAATGAAATATAAGATGAAGCAAAAACTTTCATATTATAGT
TGGACACGGAAACCCATTATGAGGGAAAGAGTGCCAAGGACAGGCAGAGC
AGTCAGAGACCCCCATAAAAATACCAAACTCATAGCTGTTATATATACAC
AGAGGCTGCTGTCTTGTATAGTCTAGGGCCACCAACCCAGTGATGGCCTC
ACCCACAATGTTCTGGGCTCCCCCCATCAATCTCCAGTAAGAACATGCAT
GATTGGCCTGCCTTTAATTCTATTTTATGGAGGAATTTTCCTAGTGGCGA
CTTGTTCCTCACAGATGACTGTGACTTTAGCTTGTGCCTAGCCGCCTTAA
CCCCAGTCACCCTATTGTCACATGGTGCTGTATGCACAGAGACGTGCAAT
CACCCTCCTTCTCTTTCTTATTTCGACCTACAATCCGCTCACTTTAGTTT
CTCGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_l24.b1 MSMg01no080_l24.b1 CHROMAT_FILE:
MSMg01no080_l24.b1 PHD_FILE: MSMg01no080_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:45 2005
         (228 letters)



>mm_chr4_131102272_131102899
          Length = 628

 Score =  397 bits (205), Expect = e-115
 Identities = 222/228 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcaggcactctgccactgaatggaaagccctggncctttgaaatccctctcttctgctc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gtcaggcactctgccactgaatggaaagccctggccctttgaaatccctctcttctgctc 260

                                                                       
Query: 61  tgtgtcttcctccttcctggccctttgagctagcctccgccctgatgtctctatctccag 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgccttcctccttcctggccctttgagctagcctccgccctgatgtctctatctccag 320

                                                                       
Query: 121 tccagccccactgtggtagtcaaaacaccctagtgtccaacacatggccatgcctgagca 180
           |||||||||||||||| |||||||||||||||||  |||||||||||||||||||| |||
Sbjct: 321 tccagccccactgtgggagtcaaaacaccctagtacccaacacatggccatgcctgggca 380

                                                           
Query: 181 caagagctcacctttgtgtacagtcacctttgcccttgtctcctgaga 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagagctcacctttgtgtacagtcacctttgcccttgtctcctgaga 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)