Query= MSMg01no080_m07.b1 MSMg01no080_m07.b1 CHROMAT_FILE:
MSMg01no080_m07.b1 PHD_FILE: MSMg01no080_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:46 2005
(630 letters)
>mm_chr4_12690818_12691848
Length = 1031
Score = 1162 bits (601), Expect = 0.0
Identities = 619/625 (99%), Gaps = 1/625 (0%)
Strand = Plus / Minus
Query: 7 gaattcatac-acattcctgcttacaatacgagaattgtgttaagctgagcaatagtatc 65
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaattcatacaacattgctgcttacaatacgagaattgtgttaagctgagcaatagtatc 772
Query: 66 tcaagaataaaataattatagcttgcttttaaaaaggaagccaaaataaatcaatggttg 125
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 771 tcaagaataaaataattatagcttgctttaaaaaaggaagccaaaataaatcaatggttg 712
Query: 126 accattaaaatccattttccgtaagtcctgctattgacatcaaatctaaaactgatgctt 185
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 711 accattaaaatccattttcaataagtcctgctattgacatcaaatctaaaactgatgctt 652
Query: 186 atgaaaggattgaaatagctagcctgtgtgggactccatacattcccactccatagtaac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 atgaaaggattgaaatagctagcctgtgtgggactccatacattcccactccatagtaac 592
Query: 246 tccaatgtggatttactttcttctattaatctcattaacaaggctgggtgaacttaatct 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tccaatgtggatttactttcttctattaatctcattaacaaggctgggtgaacttaatct 532
Query: 306 tgattgtcgaaattttcctgcttgattttctagactgatctatgcttttagtcacctacc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgattgtcgaaattttcctgcttgattttctagactgatctatgcttttagtcacctacc 472
Query: 366 aggattcagatttttgatttggatatctaaatgtatggccagaaaattttgaactgactc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aggattcagatttttgatttggatatctaaatgtatggccagaaaattttgaactgactc 412
Query: 426 tttacacattttatgaaattgattttgtgttccagaaaatggtaatataatgaaccttcc 485
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 411 tttacacattttatgaaattgattttgtgtttcagaaaatggtaatataatgaaccttcc 352
Query: 486 attgttccagagagaagccttgttttgcagttagtagactgtgtacgtgtagccagaaaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attgttccagagagaagccttgttttgcagttagtagactgtgtacgtgtagccagaaaa 292
Query: 546 ataagagctccacatcacctaccaccttttgtctgtgtgtttgtttcttcttgaagcagg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ataagagctccacatcacctaccaccttttgtctgtgtgtttgtttcttcttgaagcagg 232
Query: 606 ttttttgtgtgtgttttccagtgtg 630
|||||||||||||||||||||||||
Sbjct: 231 ttttttgtgtgtgttttccagtgtg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space: 633020
Effective search space used: 633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_m07.g1 MSMg01no080_m07.g1 CHROMAT_FILE:
MSMg01no080_m07.g1 PHD_FILE: MSMg01no080_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:46 2005
(415 letters)
>mm_chr4_12577665_12578479
Length = 815
Score = 737 bits (381), Expect = 0.0
Identities = 402/415 (96%), Gaps = 10/415 (2%)
Strand = Plus / Plus
Query: 1 attgggtttgcccaatacaatatatatatatatatatacatatgtataaaaatcgctaat 60
|||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 211 attgggtttgcccaatac----------tatatatacacatatgtataaaaatcgctaat 260
Query: 61 atttaagttgtatgactaacaagaattggtattagtatgatatcctgcttagaataattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaagttgtatgactaacaagaattggtattagtatgatatcctgcttagaataattg 320
Query: 121 atattagtaagtatccaactagaaacaaaaaagaattgtttccttatatctgcatatatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattagtaagtatccaactagaaacaaaaaagaattgtttccttatatctgcatatatc 380
Query: 181 tgtgcatatatgtacacacatattaatttgattatatatatatacagatatgtatataat 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tgtgcatatatgtacacacatattaatttgattatatatgtatacagatatgtatataat 440
Query: 241 atgtatatacatcacatatatgtatatatataatcaaattaataagactaacaactagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtatatacatcacatatatgtatatatataatcaaattaataagactaacaactagta 500
Query: 301 tttattaacagagcataagatggccctgataagcaatataatctatatcaccattatctt 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 tttattaacagagcataagatggccctgaaaagcaatataatctatatcaccattatctt 560
Query: 361 ctgagtttttatgtgcatgaaataaacagcaaaatgaacttcttagcattgtgtc 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagtttttatgtgcatgaaataaacagcaaaatgaacttcttagcattgtgtc 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
