BAC Information

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BAC

Clone NameMSMg01-081I14
Chromosome4 (Build37)
Map Location 103,427,338 - 103,427,868
singlet/doubletsinglet
Overlap genenone
Upstream geneSgip1, Tctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940
Downstream geneEG665460, LOC622315, Dab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081I14.T7 (MSMg01no081_i14.b1)MSMg01-081I14.TJ (MSMg01no081_i14.g1)
ACCAG302116AG302117
length693688
length of high quality
(start - end)
324 (35 - 358)531 (69 - 599)
definitionCHROMAT_FILE: MSMg01no081_i14.b1 PHD_FILE: MSMg01no081_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:46 2005CHROMAT_FILE: MSMg01no081_i14.g1 PHD_FILE: MSMg01no081_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAATT
CTTTGTTCCCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTG
GAGTCCACTTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCCTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGTAGAAAATTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGTACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCTTCTGTGCCCATATCTTCAAGGTTTTTCCCCACTTTCT
CCTCTATAATTTTCAGTGTCTCTGGTTTTATGTGAGGTTCCTTGATCCAC
TTATATTTGATCTTATTACTAGGAGATAAGTATGGATCGACTTGCATTCT
TTCTACATGATAACAACCAGTTGTGTCTTCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTACCTTCCTTGTTTAACATCACGCGATC
TTACGCGTGTGGCTTCATCCCTCGCTTTTCCATTTTATTCCTTTGGTTTA
CTTGTCTGTCTCTATCCCTTCATCATGCTAGCCTTTATCACAATTGCTTT
TGTACACCCTTTTTTTTCTTGTTTGCTCCCCCCTTTCTATTTT
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTACATCTTGGCTCGGTTCCTAAAGGCAGCT
AAAGTGAGATTAGAGACAAAGAGAAACATTGCAGAGAAAGGCTGCCTTAA
TTTCCGAGGTGAATGAGATGGATAGCCCTGGTGCCCAGCGGTAAACCTCT
TAGTATTTATGAAACTGAAATTACACCATTCCAATAAAAGGGAAAGCCAA
CGAAGGCACACTCTACATAATGGCCTCTTGTTAGGTCTTCCTGATTACCT
GGGCTCCCTTTTCATGATAATGCCAGTACCCAGTGTTACAGGACCCCTGT
CTGCTGGGGGCAGACAGGAACTGTTTATTTAACCAAGTGAAATTTTACAC
TTAAATAACAAATACTAGCTGTGTTTGGGTGCGAGAAACAATTACCTAAG
CTCAACAGCAACAGCGGCAAATTGCATCTGCAGCCAAAACAAGGCCACTG
ATCACACCTCAGCAGCGGCCCTACATCAAAGGCAGCCGGCCTTGTTTCTT
CATCTGCGGTTTGAACAATATTTCTCTTTGATCTTGGACACCAAGAAGCA
GCATGCGAGAGGCAAGGGAGGGGAGTGGAGGGTTTGCCTGGCTGATGTAT
ATAAACTTGCTGATTTTGTGTGGTTGACAACCCATCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_i14.g1 MSMg01no081_i14.g1 CHROMAT_FILE:
MSMg01no081_i14.g1 PHD_FILE: MSMg01no081_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:46 2005
         (531 letters)



>mm_chr4_103427138_103428068
          Length = 931

 Score = 1004 bits (519), Expect = 0.0
 Identities = 528/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacatcttggctcggttcctaaaggcagctaaagtgagattagagacaaagagaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tttacatcttggctcggttcctaaaggcagctaaagtgagattagagacaaagagaaaca 672

                                                                       
Query: 61  ttgcagagaaaggctgccttaatttccgaggtgaatgagatggatagccctggtgcccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttgcagagaaaggctgccttaatttccgaggtgaatgagatggatagccctggtgcccag 612

                                                                       
Query: 121 cggtaaacctcttagtatttatgaaactgaaattacaccattccaataaaagggaaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cggtaaacctcttagtatttatgaaactgaaattacaccattccaataaaagggaaagcc 552

                                                                       
Query: 181 aacgaaggcacactctacataatggcctcttgttaggtcttcctgattacctgggctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aacgaaggcacactctacataatggcctcttgttaggtcttcctgattacctgggctccc 492

                                                                       
Query: 241 ttttcatgataatgccagtacccagtgttacaggacccctgtctgctgggggcagacagg 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ttttcatgaaaatgccagtacccagtgttacaggacccctgtctgctgggggcagacagg 432

                                                                       
Query: 301 aactgtttatttaaccaagtgaaattttacacttaaataacaaatactagctgtgtttgg 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 431 aactgtttatttaaccaagtgaaattttacacttaaataaaaaatactagctgtgtttgg 372

                                                                       
Query: 361 gtgcgagaaacaattacctaagctcaacagcaacagcggcaaattgcatctgcagccaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtgcgagaaacaattacctaagctcaacagcaacagcggcaaattgcatctgcagccaaa 312

                                                                       
Query: 421 acaaggccactgatcacacctcagcagcggccctacatcaaaggcagccggccttgtttc 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gcaaggccactgatcacacctcagcagcggccctacatcaaaggcagccggccttgtttc 252

                                                              
Query: 481 ttcatctgcggtttgaacaatatttctctttgatcttggacaccaagaagc 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcatctgcggtttgaacaatatttctctttgatcttggacaccaagaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)