BAC Information

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BAC

Clone NameMSMg01-081L11
Chromosome4 (Build37)
Map Location 38,976,493 - 38,976,880
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039448, LOC665520, LOC100039487
Downstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081L11.T7 (MSMg01no081_l11.b1)MSMg01-081L11.TJ (MSMg01no081_l11.g1)
ACCAG302254AG302255
length701701
length of high quality
(start - end)
474 (50 - 523)415 (76 - 490)
definitionCHROMAT_FILE: MSMg01no081_l11.b1 PHD_FILE: MSMg01no081_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:01 2005CHROMAT_FILE: MSMg01no081_l11.g1 PHD_FILE: MSMg01no081_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAACTGACCCATATTGAATGGCTGAGAAACACCTAAAGAA
ATGTTCAACATCTTTAGTCATCAGGGAAATGCAAATTAAAACAACCCTGA
GATTCCACCTCACACTGGTCAGAAAGTCTAAGATCAAAAACTCAGGTGAC
AGCAGATGGTGATGAGGATGTGGAGAAGGAGGAACACTCCTCCATTGCTG
GTGGAATTTCAAGCTGGTACAACCACTCTGGAAATCAGTCTGGCTGTTCT
TCTGAAAATTGAACATAGTACTTTCTACCTAAGGACCCAGCTCTACTATT
CCTGGTCACATACCCAGAAGATGCTCTAACATATAACAAGGACACATGCT
CCACTATGTTCATAGCAACCATATTTATAATAGCCAGAAGCTGGAAACAA
CCCAGATGTCCCTCAACAGAGGAATAGATACAAAATATGTGGTACATTTA
CACTATGGAATATTACTTAGCTATTAAAAACAATATCTTGGCCGGTCGTG
GTGGCGCACGCCTTTAATCCCAGCACTTGGAAAGCACAGGCAGGCGGATT
TCTGAGTTGAAGGTCAGCCTGTTCTACTGAGTGATTTCCAGGACAGTCCC
GGGCTATTCAGAGAAACCCTGTTTTCTATAATTTCTCTATTTACACTTTT
A
NNNCCATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACACATCACCAGTCCATTGTT
CAAATTCTTCACCAACATATAACACTAATGGTCTTTTTTTCTTCCCAGGA
AGATGTGGTTGAGTAGGTAAGAAGAAAAATGATATAAACTATTTACTTTT
ATTCACTTTCAAGGAAACCTCATGGAAATTAGGTGAAAGCTATACCAATG
ATAAATGAAACAATAGGAGTAAAATCTAAGTAACTTGAATAGAATTCTAC
TTTCTTAGAACTTGAATAGAATTCTACTTCTTTGGAATGAAATATTTTTT
AAAGTAGAGCTGTAAATTATGCCATCTATATAATACAAACATTATAATTC
CTTGATAAGAAGATAAAACTGAGCAAGATACCAACATGATTTATATAAAT
AATAGAACAATGCTGCTGATTCTCAGAACTAGGGGAGACCATTAGCAATG
TACAACATCAGTTTCAAGTGGAGATCCCATTGGGCTGAAGATGCCAAGAC
TATGTAGCAGCAGATTTGGAGTACTTTGAGCCTGAGTTATCATATAAATT
GTGCTGCGGGTGTCATAATGGAATAGGCTGAACCATTTCAGCCCCTTGGA
ACCCCGCAGATCCTGAGTGAGCCCCAGAAATCAGAACCTGAAATTCCTTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_l11.g1 MSMg01no081_l11.g1 CHROMAT_FILE:
MSMg01no081_l11.g1 PHD_FILE: MSMg01no081_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:01 2005
         (415 letters)



>mm_chr4_38976293_38977107
          Length = 815

 Score =  671 bits (347), Expect = 0.0
 Identities = 385/415 (92%), Gaps = 27/415 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacacatcaccagtccattgttcaaattcttcaccaacatataacactaatggtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacacatcaccagtccattgttcaaattcttcaccaacatataacactaatggtctt 260

                                                                       
Query: 61  tttttcttcccaggaagatgtggttgagtaggtaagaagaaaaatgatataaactattta 120
            |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 cttttcttcacaggaagatgtggttgagtaggtaaggagaaaaatgatataaactattta 320

                                                                       
Query: 121 cttttattcactttcaaggaaacctcatggaaattaggtgaaagctataccaatgataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttattcactttcaaggaaacctcatggaaattaggtgaaagctataccaatgataaa 380

                                                                       
Query: 181 tgaaacaataggagtaaaatctaagtaacttgaatagaattctactttcttagaacttga 240
           |||||||||||||||||||||||||||||||||||||||||||||||             
Sbjct: 381 tgaaacaataggagtaaaatctaagtaacttgaatagaattctactt------------- 427

                                                                       
Query: 241 atagaattctacttctttggaatgaaatattttttaaagtagagctgtaaattatgccat 300
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 --------------ctttggaatgaaatattttttaaagtagagctgtaaattatgccat 473

                                                                       
Query: 301 ctatataatacaaacattataattccttgataagaagataaaactgagcaagataccaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctatataatacaaacattataattccttgataagaagataaaactgagcaagataccaac 533

                                                                  
Query: 361 atgatttatataaataatagaacaatgctgctgattctcagaactaggggagacc 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atgatttatataaataatagaacaatgctgctgattctcagaactaggggagacc 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)