BAC Information

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BAC

Clone NameMSMg01-081M15
Chromosome4 (Build37)
Map Location 131,890,461 - 131,891,018
singlet/doubletsinglet
Overlap geneRcc1
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1
Downstream geneSnhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081M15.T7 (MSMg01no081_m15.b1)MSMg01-081M15.TJ (MSMg01no081_m15.g1)
ACCAG302310AG302311
length707703
length of high quality
(start - end)
560 (37 - 596)465 (66 - 530)
definitionCHROMAT_FILE: MSMg01no081_m15.b1 PHD_FILE: MSMg01no081_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:06 2005CHROMAT_FILE: MSMg01no081_m15.g1 PHD_FILE: MSMg01no081_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGA
AGGATGCCAGTTTTGAGGAATGAAGCAAGATCCAGTGCCTGGAGTCCCTG
TTGTCAAGGGGGACAGAGTTCCAGAAGCTTCTCTGTCACCCCCAGAAATG
CCACCTCATATCCACCACGGCTCCGAGGGGGTCAGACTATCCCGGGACTG
GAATCCAGGCACTGAGTCAGGTCTGAGGAGGACTCACCGAGCTGGTGATA
GTTGGAGAGGCCAAAGCCATACACATGGCCCTCTCGGGAGATGGCAAAAG
TGAAATAGGCGCCACAGAAGGCATCCTGGAACCGCACACGGCCCCGGGTC
CCCCTGGATTTCAGCAGCACACATCTGGGGACCAGGAGTCGCCCTGTAAG
TATAGAGGAAGCCAGGGTCAGTGACAGACACAGGGTATTTCCCAAAGGAG
GCTAATCAGGGTCACCCTTGATTGGCCTCCTGATCAAACACCCTGCTCAA
AAATTTAACTCTTGAAATGAGAAGCTTAAGGGGAACTTACCCTGCGCCAG
ATATTTTTCTGACCAAGACATTTCTCTCTTCACAGTTACCAATTAGGGGC
AGGGAGGTGGGGGAGGAGCTAGAGATAAGGAATCAGTCCCCTAAGTCGGA
GCCCCATCCCTTCGAGATTATTTACTGGCTGGTCTAGAATTCAGTATGTA
TACCAGG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACTGTGTAGACCAGGCTGGCCTCGAACTCACAGAG
ATCTGCCTTTCTCTGGCTCCTGAGTGCTGGGATTAAAGAGATTTGGAATT
GTTAATGTCAGATAAAGTTAACTTTCTTTCTTTTCTTTTTTTAAAGATTT
ATTTATTTATTTTATGTTTATGAGTACACTGTTGCTGTCTTCAGACATAC
CAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGA
TTACTGGGAATTGAACTCATGGCCTCTGGAAGAGCAGTCAGTGCTCTTAA
CCGCTGAGCCTTTTCTCCAGCCCCTAAAGTTAACTTTCTATATAAATAAA
AGTACTTGTGAGGCTAGGGAATTAGCTCATTTGGTAAAGACTTACTTTAA
ACTCTCTGGATCTATGCAAAAACGGCAGGTGTGATGGCTTGTTGTTGTAA
TCCTGGCACTGGGGAGGTGGTAACAGGCGGATCCTGAGGCTCCCTGTTCA
GTCAGGCCAGCCTAATTGGGGAGCTCCAGGTCCCAGTGAGAGAACTTGTC
TCAAAAATAAGGTGCAGGGTGATTGAAGAATGACCCAACATCTACCTCTG
GTTTCCCTGTACCTGCATCATACGCACAGGGTAAACTATTGAGCCTCTGT
GAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_m15.b1 MSMg01no081_m15.b1 CHROMAT_FILE:
MSMg01no081_m15.b1 PHD_FILE: MSMg01no081_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:06 2005
         (560 letters)



>mm_chr4_131890258_131891218
          Length = 961

 Score = 1025 bits (530), Expect = 0.0
 Identities = 551/558 (98%), Gaps = 1/558 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgaaggatgcca-gttttgaggaatgaagcaagatccagtgcctggagtccc 62
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgaaggatgtcaagttttgaggaatgaagcaagatccagtgcctggagtccc 263

                                                                       
Query: 63  tgttgtcaagggggacagagttccagaagcttctctgtcacccccagaaatgccacctca 122
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 264 tgttgtcaagggggacagagttccagaagcttctctgccacccccagaaatgccacctta 323

                                                                       
Query: 123 tatccaccacggctccgagggggtcagactatcccgggactggaatccaggcactgagtc 182
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatccaccacggctccaagggggtcagactatcccgggactggaatccaggcactgagtc 383

                                                                       
Query: 183 aggtctgaggaggactcaccgagctggtgatagttggagaggccaaagccatacacatgg 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 aggtctgaggaggactcaccgagctggtgatagttggagaggccaaagccatacacgtgg 443

                                                                       
Query: 243 ccctctcgggagatggcaaaagtgaaataggcgccacagaaggcatcctggaaccgcaca 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccctctcgggagatggcaaaagtgaaataggcgccacagaaggcatcctggaaccgcaca 503

                                                                       
Query: 303 cggccccgggtccccctggatttcagcagcacacatctggggaccaggagtcgccctgta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cggccccgggtccccctggatttcagcagcacacatctggggaccaggagtcgccctgta 563

                                                                       
Query: 363 agtatagaggaagccagggtcagtgacagacacagggtatttcccaaaggaggctaatca 422
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 agtatagaggaagccagggtcagtgacaaacacagggtatttcccaaaggaggctaatca 623

                                                                       
Query: 423 gggtcacccttgattggcctcctgatcaaacaccctgctcaaaaatttaactcttgaaat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggtcacccttgattggcctcctgatcaaacaccctgctcaaaaatttaactcttgaaat 683

                                                                       
Query: 483 gagaagcttaaggggaacttaccctgcgccagatatttttctgaccaagacatttctctc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagaagcttaaggggaacttaccctgcgccagatatttttctgaccaagacatttctctc 743

                             
Query: 543 ttcacagttaccaattag 560
           ||||||||||||||||||
Sbjct: 744 ttcacagttaccaattag 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space:   523050
Effective search space used:   523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)