BAC Information

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BAC

Clone NameMSMg01-082A24
Chromosome4 (Build37)
Map Location 133,452,031 - 133,452,487
singlet/doubletsinglet
Overlap genenone
Upstream geneBC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1
Downstream gene4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082A24.T7 (MSMg01no082_a24.b1)MSMg01-082A24.TJ (MSMg01no082_a24.g1)
ACCAG302519AG302520
length719710
length of high quality
(start - end)
333 (125 - 457)457 (67 - 523)
definitionCHROMAT_FILE: MSMg01no082_a24.b1 PHD_FILE: MSMg01no082_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:27 2005CHROMAT_FILE: MSMg01no082_a24.g1 PHD_FILE: MSMg01no082_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGAAATTC
TGGGATATTTTCCGGCACGGGAAGATTCACCAGGGAAGACGTGAGGAGAA
TATAGATTAATATAGATAGCGCATTTTAGTTATGATCTAGTAAGAGAAGA
ACCTAGCTATATGGCCACGGTATTTGTAAATATATCTTGAGTCTGAGTCT
TATTTCTGGAAGCATGGGGCTGAGAGGAAGAATCGGACCTAAGATCAACA
CCCTGGGGAGCAATACAATATAATTAATAATATAATTATAATTTTGAAAC
ACTTAGTATGCAGATGTGGGGTGCTAATTACCATCTCCTATAATGGGAAC
TGGAGTTCCTTAGGAAATTCTTGATTCTAGATTTGGGCAAGACACATACA
TAATTGTTTTAGGGGAGGGGGTATCATGTTGTGCCCCTGAAACAAGGATG
TTCCCCAGACTACGGGGCCATGTCAAAAGGACTAAGAGACTGTGCTCCAA
AGGTGTAGCGATCTGAGCATGCCCAGGAATAGTGACTACACGGATTGAAC
ATACCAGGTGTACAACGGTCTCTGTTGCTTAGTTAGATTCTCCACAGTGA
GGCCCTGTCTCACAAACCCTTTTGTATTTAAATAGTATTATTGGGCATAG
CAACCCCCTCAAGGAGTACTAATGTATGTGCGATCTCCCGGGTATCCAAG
TCAGCCCTGTTCTACATGG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTCACATCCCATGTCTCCATTCTGTGGAGGTGTT
GGAGAGCCATGTGTCACTGTGGCAAGAGGGGAGCCCAGAGGACAGATGGG
CTCTCTAGGGGCACTTGGTCAGTCTGGTCAGTTTCCCATCTGTTCCTGGA
GTAGAAATAGCAGTCATTTAAGAGAGAGTTATAGTGAACTACAGCCCCCA
ACCTCAGCACCCATGTAGCTATCACCCTCACACAGCTTAAGCTTGGTTCC
ACTTCTCCCTTAAATGCCTTTAATTTCAGAACTTGGAAGGCAGAGGCAAA
TTCTTGGGAGTTCGAGGCTAGCCTTGTCTACTGTTTTAGTTACTTTTCTG
TTGTGATAAAACAGTACAATCGAGGCCACTTAAACAAGAATGAGTTTATT
TGGGGGTTATAGTTCCAAAGGAATGAGAGTCCATGACTGTTGGCTTTCAA
GGGATTCTGCTGGGTTCCTCTCAGGGACCTAGTAATGGCTTATGTTATTG
CCTGCCACTGACCACAGGAGAGAGCCAGGTGAGGGCCAGGTGGGAGCCAG
GTGGGAGCCAGGTGAGGGCCAAGTGAGGGCCAGGTGAGGTAGTAAATAAA
AAGGACTGCTTGCTTTCCCTTCCTCCAGCCCCTACTGATTTGCTTTCTTT
TTCCCTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_a24.g1 MSMg01no082_a24.g1 CHROMAT_FILE:
MSMg01no082_a24.g1 PHD_FILE: MSMg01no082_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:27 2005
         (457 letters)



>mm_chr4_133451831_133452687
          Length = 857

 Score =  884 bits (457), Expect = 0.0
 Identities = 457/457 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcacatcccatgtctccattctgtggaggtgttggagagccatgtgtcactgtggcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcacatcccatgtctccattctgtggaggtgttggagagccatgtgtcactgtggcaag 260

                                                                       
Query: 61  aggggagcccagaggacagatgggctctctaggggcacttggtcagtctggtcagtttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggggagcccagaggacagatgggctctctaggggcacttggtcagtctggtcagtttcc 320

                                                                       
Query: 121 catctgttcctggagtagaaatagcagtcatttaagagagagttatagtgaactacagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctgttcctggagtagaaatagcagtcatttaagagagagttatagtgaactacagcc 380

                                                                       
Query: 181 cccaacctcagcacccatgtagctatcaccctcacacagcttaagcttggttccacttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaacctcagcacccatgtagctatcaccctcacacagcttaagcttggttccacttct 440

                                                                       
Query: 241 cccttaaatgcctttaatttcagaacttggaaggcagaggcaaattcttgggagttcgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccttaaatgcctttaatttcagaacttggaaggcagaggcaaattcttgggagttcgag 500

                                                                       
Query: 301 gctagccttgtctactgttttagttacttttctgttgtgataaaacagtacaatcgaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctagccttgtctactgttttagttacttttctgttgtgataaaacagtacaatcgaggc 560

                                                                       
Query: 361 cacttaaacaagaatgagtttatttgggggttatagttccaaaggaatgagagtccatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacttaaacaagaatgagtttatttgggggttatagttccaaaggaatgagagtccatga 620

                                                
Query: 421 ctgttggctttcaagggattctgctgggttcctctca 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgttggctttcaagggattctgctgggttcctctca 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)