This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-082E03
Chromosome
4 (Build37)
Map Location
71,089,557 - 71,242,237
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Megf9
,
LOC100039565
,
LOC100039979
Downstream gene
LOC667638
,
EG667649
,
Tle1
Link
Open Mouse BAC browser
Click to get alignment info.
name
Megf9
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:230316
MGI:1918264
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100039565
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039565
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
LOC100039979
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039979
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 2610 ESTs, 6 Proteins
name
LOC667638
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:667638
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
EG667649
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:667649
MGI:3647299
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
name
Tle1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:21885
MGI:104636
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Megf9
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803271
GeneID:230316
MGI:1918264
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: multiple EGF-like-domains 9
transcript_id
: NM_172694.2
name
LOC100039979
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149252586
GeneID:100039979
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 2610 ESTs, 6 Proteins
product
: similar to ribosomal protein
transcript_id
: XM_001474183.1
name
EG667649
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94371921
GeneID:667649
MGI:3647299
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
product
: predicted gene, EG667649
transcript_id
: XM_991681.1
name
Tle1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141803329
GeneID:21885
MGI:104636
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: transducin-like enhancer of split 1, homolog of Drosophila E(spl)
transcript_id
: NM_011599.3
name
Megf9
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27370004
CCDS:CCDS18273.1
GeneID:230316
MGI:1918264
definition
GO_component
: GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004872 - receptor activity [Evidence IEA]
codon_start
: 1
product
: EGF-like-domain, multiple 5
protein_id
: NP_766282.1
name
LOC100039979
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149252587
GeneID:100039979
definition
codon_start
: 1
product
: similar to ribosomal protein
protein_id
: XP_001474233.1
name
EG667649
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94371922
GeneID:667649
MGI:3647299
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_996775.1
name
Tle1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31543870
CCDS:CCDS18274.1
GeneID:21885
MGI:104636
definition
GO_component
: GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA]
GO_function
: GO:0003682 - chromatin binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003714 - transcription corepressor activity [Evidence IDA]
GO_process
: GO:0007275 - development [Evidence IEA]; GO:0007222 - frizzled signaling pathway [Evidence IEA]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: transducin-like enhancer of split 1
product
: transducin-like enhancer protein 1
protein_id
: NP_035729.2
name
LOC100039565
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039565
definition
number
: 1
pseudo
: _no_value
name
LOC100039565
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039565
definition
number
: 2
pseudo
: _no_value
name
LOC667638
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667638
definition
number
: 1
pseudo
: _no_value
name
LOC667638
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667638
definition
number
: 2
pseudo
: _no_value
name
LOC667638
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:667638
definition
number
: 3
pseudo
: _no_value
clone name
MSMg01-442L04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-278B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138L01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067O18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-047H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477G08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-430E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-182D07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196D18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399M05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-422F15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377O23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-545P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-391F17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-101F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111B19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-292N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-318G04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-379I12
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-453B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-050G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-096K14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-479L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-533C13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-154N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312J06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176A08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402C20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-082E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147J06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-090F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133J05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-393L11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-201D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-542O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-139C18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-186L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-186M23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-548L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-146J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-217P08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-169M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-308B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-067N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264M11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-204H18
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-278N04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-141B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-261B03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512L19
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-493N16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361A11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-177K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-444A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-110H07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-092J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-161L02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-419P15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516E11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-429I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-134F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-149D18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268E16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273M08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-548D11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-405O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-279C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-479O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072O02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504L01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-046K21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-041E02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-029B06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-145P22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-156L07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-084H23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-084I24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-314M11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-314K19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-078O01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-030E03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-009P02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-186A01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-170E09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-190E18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-109F23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-018D15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-177P01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-225D12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-324P04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-024B16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-336H05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-182E20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-209E06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-006H13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-181F05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-253J07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-325H16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-233I11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-277D07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-155L21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-061F18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-139A22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-124M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-107G07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-289I16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-013L09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-318L14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-302J08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157P18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-121E14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-140D13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-216E04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-332J11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-220I06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-123F04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-171P19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-288K05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-057J22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-024P10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-255J02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-209K07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-281L14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-247M02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-234M07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-179O18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-001L20
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-097A02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-343F15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-317K04
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-197A14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-068L19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-175L20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-185L16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-193O02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-227G05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-188E18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-060M22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-322A17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-208B06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-349F04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-002A19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-315O10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-029L14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-308A10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-066B22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-316C02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-110J03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-303O03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-232C24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-318P18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-056D20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-058M19
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B6Ng01-146A08
singlet/doublet
doublet
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unique
clone name
B6Ng01-326O08
singlet/doublet
doublet
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unique
clone name
B6Ng01-244H11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-122I23
singlet/doublet
doublet
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B6Ng01-154B23
singlet/doublet
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B6Ng01-207K19
singlet/doublet
doublet
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unique
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B6Ng01-339H19
singlet/doublet
doublet
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B6Ng01-117J02
singlet/doublet
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B6Ng01-141P11
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doublet
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B6Ng01-173M19
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B6Ng01-300P17
singlet/doublet
doublet
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B6Ng01-295M06
singlet/doublet
singlet
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B6Ng01-071H21
singlet/doublet
singlet
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unique
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B6Ng01-258L20
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doublet
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B6Ng01-051A18
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doublet
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B6Ng01-180E19
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doublet
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B6Ng01-140A16
singlet/doublet
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clone name
B6Ng01-287P09
singlet/doublet
doublet
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clone name
B6Ng01-167D07
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doublet
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B6Ng01-099B01
singlet/doublet
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B6Ng01-075H05
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B6Ng01-127F06
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B6Ng01-139C03
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B6Ng01-121P07
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B6Ng01-026E14
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B6Ng01-288J11
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B6Ng01-328A21
singlet/doublet
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B6Ng01-265A18
singlet/doublet
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B6Ng01-170J15
singlet/doublet
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B6Ng01-268M05
singlet/doublet
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