Query= MSMg01no083_c20.b1 MSMg01no083_c20.b1 CHROMAT_FILE:
MSMg01no083_c20.b1 PHD_FILE: MSMg01no083_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:50 2005
(508 letters)
>mm_chr4_12690924_12691831
Length = 908
Score = 951 bits (492), Expect = 0.0
Identities = 504/508 (99%)
Strand = Plus / Minus
Query: 1 ctgcttacaatacgagaattgtgttaagctgagcaatagtatctcaagaataaaataatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ctgcttacaatacgagaattgtgttaagctgagcaatagtatctcaagaataaaataatt 649
Query: 61 atagcttgcttttaaaaaggaagccaaaataaatcaatggttgaccattaaaatccattt 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 atagcttgctttaaaaaaggaagccaaaataaatcaatggttgaccattaaaatccattt 589
Query: 121 tccgtaagtcctgctattgacatcaaatctaaaactgatgcttatgaaaggattgaaata 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tcaataagtcctgctattgacatcaaatctaaaactgatgcttatgaaaggattgaaata 529
Query: 181 gctagcctgtgtgggactccatacattcccactccatagtaactccaatgtggatttact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gctagcctgtgtgggactccatacattcccactccatagtaactccaatgtggatttact 469
Query: 241 ttcttctattaatctcattaacaaggctgggtgaacttaatcttgattgtcgaaattttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttcttctattaatctcattaacaaggctgggtgaacttaatcttgattgtcgaaattttc 409
Query: 301 ctgcttgattttctagactgatctatgcttttagtcacctaccaggattcagatttttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctgcttgattttctagactgatctatgcttttagtcacctaccaggattcagatttttga 349
Query: 361 tttggatatctaaatgtatggccagaaaattttgaactgactctttacacattttatgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttggatatctaaatgtatggccagaaaattttgaactgactctttacacattttatgaa 289
Query: 421 attgattttgtgttccagaaaatggtaatataatgaaccttccattgttccagagagaag 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 attgattttgtgtttcagaaaatggtaatataatgaaccttccattgttccagagagaag 229
Query: 481 ccttgttttgcagttagtagactgtgta 508
||||||||||||||||||||||||||||
Sbjct: 228 ccttgttttgcagttagtagactgtgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_c20.g1 MSMg01no083_c20.g1 CHROMAT_FILE:
MSMg01no083_c20.g1 PHD_FILE: MSMg01no083_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:50 2005
(461 letters)
>mm_chr4_12577665_12578525
Length = 861
Score = 833 bits (431), Expect = 0.0
Identities = 449/461 (97%), Gaps = 10/461 (2%)
Strand = Plus / Plus
Query: 1 attgggtttgcccaatacaatatatatatatatatatacatatgtataaaaatcgctaat 60
|||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 211 attgggtttgcccaatac----------tatatatacacatatgtataaaaatcgctaat 260
Query: 61 atttaagttgtatgactaacaagaattggtattagtatgatatcctgcttagaataattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttaagttgtatgactaacaagaattggtattagtatgatatcctgcttagaataattg 320
Query: 121 atattagtaagtatccaactagaaacaaaaaagaattgtttccttatatctgcatatatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattagtaagtatccaactagaaacaaaaaagaattgtttccttatatctgcatatatc 380
Query: 181 tgtgcatatatgtacacacatattaatttgattatatatatatacagatatgtatataat 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tgtgcatatatgtacacacatattaatttgattatatatgtatacagatatgtatataat 440
Query: 241 atgtatatacatcacatatatgtatatatataatcaaattaataagactaacaactagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtatatacatcacatatatgtatatatataatcaaattaataagactaacaactagta 500
Query: 301 tttattaacagagcataagatggccctgaaaagcaatataatctatatcaccattatctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttattaacagagcataagatggccctgaaaagcaatataatctatatcaccattatctt 560
Query: 361 ctgagtttttatgtgcatgaaataaacagcaaaatgaacttcttagcattgtgtctggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagtttttatgtgcatgaaataaacagcaaaatgaacttcttagcattgtgtctggat 620
Query: 421 tattggtcctctaattgggaggtggggtgcttatatctgtt 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattggtcctctaattgggaggtggggtgcttatatctgtt 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
