Query= MSMg01no083_d07.b1 MSMg01no083_d07.b1 CHROMAT_FILE:
MSMg01no083_d07.b1 PHD_FILE: MSMg01no083_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:52 2005
(232 letters)
>mm_chr4_48722281_48722912
Length = 632
Score = 402 bits (208), Expect = e-117
Identities = 226/232 (97%)
Strand = Plus / Minus
Query: 1 gatttctttatatactgtcataaatgtgatggagatgcctgtgagcgtagcaatattaat 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 432 gatttctttatatactgtcataaatgtgatggagatgcctgtgagcgcagcaatattaat 373
Query: 61 ttggatctgatcatttgtcttttccaggatcttatcactgtgaggagatattatcgaaga 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 372 ttggatctgatcatttgtcttttccaggatcttatcaatgtgaggagatattatcaaagg 313
Query: 121 ccctcaggccttcagaacctagcgttattaaaaatcaatactgccgctatgaatggcact 180
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 312 cccccaggccttcagaacctagcgttattaaaaatcaatactgccgctatgagtggcact 253
Query: 181 tgggaatgcttccgagaagaaaaccacatctgtagtttcataaatggatttc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgggaatgcttccgagaagaaaaccacatctgtagtttcataaatggatttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space: 138929
Effective search space used: 138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no083_d07.g1 MSMg01no083_d07.g1 CHROMAT_FILE:
MSMg01no083_d07.g1 PHD_FILE: MSMg01no083_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:52 2005
(260 letters)
>mm_chr4_48567368_48568028
Length = 661
Score = 420 bits (217), Expect = e-122
Identities = 253/275 (92%), Gaps = 17/275 (6%)
Strand = Plus / Plus
Query: 1 tggggattgaactctggtgtcaggcttggagacaaatagctttatctcaccagccctcgt 60
||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||| |
Sbjct: 201 tggggattgaactctggtgtcaggcttggtgataaatagctttatctcactagccctcat 260
Query: 61 agggttcattttgggaacaaaacacctttttttcccccacacttttaaaatctgaggttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggttcattttgggaacaaaacacctttttttcccccacacttttaaaatctgaggttg 320
Query: 121 gatattgagattt-acttctttcctttggaaaaaaatgcaattcatttactcagaaattt 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatattgagattttacttctttcctttggaaaaaaatgcaattcatttactcagaaattt 380
Query: 180 tgagcaagaaggaaataaaatatggatcttctttttttcctctctctctctctctct--- 236
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcaagaaggatataaaatatggatcttctttttttcctctctctctctctctctctc 440
Query: 237 -------------ttttgtttgtttgttttgtttt 258
||||||||||||||||||||||
Sbjct: 441 tctctctctgattttttgtttgtttgttttgtttt 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 661
Length adjustment: 9
Effective length of query: 251
Effective length of database: 652
Effective search space: 163652
Effective search space used: 163652
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
