Query= MSMg01no083_g17.b1 MSMg01no083_g17.b1 CHROMAT_FILE:
MSMg01no083_g17.b1 PHD_FILE: MSMg01no083_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:08 2005
(553 letters)
>mm_chr4_18616746_18617699
Length = 954
Score = 901 bits (466), Expect = 0.0
Identities = 491/502 (97%), Gaps = 7/502 (1%)
Strand = Plus / Minus
Query: 1 aatttataccatgcatttgatgatatacattctttatactcata-attcatatcatcata 59
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 496 aatttat---atgcatttgatgatatacattctttatactcatacattcatatcatcata 440
Query: 60 tcctccatcacttccattctcactaaattttatgttgtcttttttactattattctttta 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcctccatcacttccattctcactaaattttatgttgtcttttttactattattctttta 380
Query: 120 aacatatcaagtactggtggaactatctgcatacttttgttgcgtggtctttcacttgaa 179
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 379 aacatatcaagtactggtggaactatctgcatacttttgttgcatagtctttcacttgaa 320
Query: 180 tgtgatgaacttactatgtgccacatctataaagtaaaacagacttttcttcttttaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgtgatgaacttactatgtgccacatctataaagtaaaacagacttttcttcttttaaca 260
Query: 240 gatatttgttgcttgactgaccagcatgcgtgtgtacacatagtcattcaaatattataa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gatatttgttgcttgactgaccagcatgcgtgtgtacacatagtcattcaaatattataa 200
Query: 300 aataattttaaaatactttggctgatataatacaaattgcattatttctccacagagaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aataattttaaaatactttggctgatataatacaaattgcattatttctccacagagaca 140
Query: 360 actctgaatccaaataggcaaacattaggctagtgcaaagagaggcaaagcactctcaca 419
||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||
Sbjct: 139 actctgaatccaaataggcaaacattaggttagtgcaaagagaagcaaagc---ctcaca 83
Query: 420 tgccttttgccttattttattctgttcttagatattccttcttgagcaattccagacatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 tgccttttgccttattttattctgttcttagatattccttcttgagcaattccagacatt 23
Query: 480 gctttccatatattacatatat 501
||||||||||||||||||||||
Sbjct: 22 gctttccatatattacatatat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_g17.g1 MSMg01no083_g17.g1 CHROMAT_FILE:
MSMg01no083_g17.g1 PHD_FILE: MSMg01no083_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:08 2005
(453 letters)
>mm_chr4_18511691_18512544
Length = 854
Score = 812 bits (420), Expect = 0.0
Identities = 441/448 (98%), Gaps = 1/448 (0%)
Strand = Plus / Plus
Query: 2 atcagtaagtctttttgacaaaaaa-gctatactctactaacttctcttgtggctagtaa 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 202 atcagtaagtctttttgacaaaaaatgctatactctactaacttctcttgtggctagtaa 261
Query: 61 ataacagatacaattaataaggacaacgtaccaaaactattgcaaagaaatgcaatatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ataacagatacaattaataaggacaacgtaccaaaactattgcaaagaaatgcaatatat 321
Query: 121 gcatgtccagcaaatgaaaatattcataatcaaatgaaccagcaaaatacattgagcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 322 gcatgtccagcaaatgaaaatattcataatcaaatgaaccagcaaaatacattgaccatt 381
Query: 181 ttgatgagtatatttgatggagatagacttttacttgtgccattttgtagtttattgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttgatgagtatatttgatggagatagacttttacttgtgccattttgtagtttattgtct 441
Query: 241 gttggtaacaataaccactctaatttggatgttacatatagtatatgtacaccaaatcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 442 gttggtaacaataaccactctaatttggatgttacatatagtatatgtacagcaaatcat 501
Query: 301 tacataggttttgggcgccagatgtgggggaataaaggcaatgggagaaaacctgcgccc 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 502 tacataggttttgggcgccagatgtgggggaataaagggaatgggagaaaacctgcgccc 561
Query: 361 caccagtgtttcggtgctatgggcgggcagactctacaggactgccaggctctgggtgga 420
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 562 caccagagtttcggtgctatgggcgggcagactctacaggactgccaggccctgggtggg 621
Query: 421 tgtctggctgtgggaagccacagaacct 448
||||||||||||||||||||||||||||
Sbjct: 622 tgtctggctgtgggaagccacagaacct 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 854
Length adjustment: 10
Effective length of query: 443
Effective length of database: 844
Effective search space: 373892
Effective search space used: 373892
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
