Query= MSMg01no083_j23.b1 MSMg01no083_j23.b1 CHROMAT_FILE:
MSMg01no083_j23.b1 PHD_FILE: MSMg01no083_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:24 2005
(488 letters)
>mm_chr4_150486475_150487362
Length = 888
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Minus
Query: 5 gaattcctgattttacctgcaagacccttattaaatatgccatttatatgtttcctcctt 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaattcctgattttagatgcaagacccttattaaatatgccatttatatgtttcctcctt 491
Query: 65 tttggtgtctttctgctccttagtgctattcttggaagcacaactgtgtttcattttgct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttggtgtctttctgctccttagtgctattcttggaagcacaactgtgtttcattttgct 431
Query: 125 caagttcaggttatttattgtccctttgatggcttgtatctttgagatcatatttaaagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caagttcaggttatttattgtccctttgatggcttgtatctttgagatcatatttaaagt 371
Query: 185 ggccaccaacaaagtccatgtcataacaatctgccgataagacgcttgaaggagttctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggccaccaacaaagtccatgtcataacaatctgccgataagacgcttgaaggagttctat 311
Query: 245 agtttggattcttgcagatttttgttggactgtgagtttgtttttatatcccatgtgaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agtttggattcttgcagatttttgttggactgtgagtttgtttttatatcccatgtgaga 251
Query: 305 taaggaaatgtccctttttggtttttttgagtgcaggtatccggtgttttaaaaaaaatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taaggaaatgtccctttttggtttttttgagtgcaggtatccggtgttttaaaaaaaatt 191
Query: 365 ctttatcacatgtataggagtacactgttgctgtcttcagacacaccagaagagggcatt 424
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 ctttattatatgtataggagtacactgttgctgtcttcagacacaccagaagagggcatt 131
Query: 425 ggatcctattacagatggttatgagccaccatgtggttgctgggaattgaactcaggacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ggatcctattacagatggttatgagccaccatgtggttgctgggaattgaactcaggacc 71
Query: 485 tctg 488
||||
Sbjct: 70 tctg 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_j23.g1 MSMg01no083_j23.g1 CHROMAT_FILE:
MSMg01no083_j23.g1 PHD_FILE: MSMg01no083_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:24 2005
(470 letters)
>mm_chr4_150323997_150324870
Length = 874
Score = 687 bits (355), Expect = 0.0
Identities = 395/411 (96%), Gaps = 9/411 (2%)
Strand = Plus / Plus
Query: 65 ttct-ttctttttcttttcttttctttttagcaaatttgtttgttttgtgacacagagag 123
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttctcttc-ttttcttttcttttctttttagcaaatttgtttgttttgtgacacagagag 326
Query: 124 tcaggttgctgccaggctggaactgccagaatcaaggagcctcaagccttggcttcccga 183
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327 tcaggttgctgccaggctggaactgccaggatcaaggagcctcaagccttggcttcccga 386
Query: 184 gcagctgggactacagacatgtccccaactggcaacccc-gtaagttcagaagtgacttc 242
|||||||||| || |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 387 acagctgggac---aggcatgtccccaactggcaacccctgtaagttcagaagtgacttc 443
Query: 243 tcttgcctttggacacttggtgtcttggtctgtctgc---ccccccccatcccccagtcc 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 tcttgcctttggacacttggtgtcttggtctgtctgcgccccccccccatcccccagtcc 503
Query: 300 acatgtgatgcaccccccacctctctgatgcagcacatcttgcccaagagagttagactc 359
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 acatgtgatgcaccccccacctctctgatgcagcacatcttgggtaagagagttagactc 563
Query: 360 tcatttatttccaactaggaacacagaaagcacacaatagggtatgcttatccgatggag 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 564 tcatttatttccaactaggaacacagaaagcacacaacagggtatgcttatccgatggag 623
Query: 420 gctgtgttagctacctcatctctgtgacacagagacagagtgagggaaggt 470
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctgtgttagctacctcatctctgtgacacagagacagagtgagggaaggt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 874
Length adjustment: 10
Effective length of query: 460
Effective length of database: 864
Effective search space: 397440
Effective search space used: 397440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
