Query= MSMg01no083_o05.b1 MSMg01no083_o05.b1 CHROMAT_FILE:
MSMg01no083_o05.b1 PHD_FILE: MSMg01no083_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:45 2005
(371 letters)
>mm_chr4_115468457_115469227
Length = 771
Score = 563 bits (291), Expect = e-165
Identities = 306/311 (98%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 62 ttacaaatcactc-tttttttttttaagatttatttattattatatctaagtacactgta 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ttacaaatcactcttttttttttttaagatttatttattattatatctaagtacactgta 712
Query: 121 gctgtcttcagatgcaccaaaagagggcatcagatctcattacggatggttgagagccac 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 711 gctgtcttcagatgcaccaaaagagggcatcagatctcactacggatggttgagagccac 652
Query: 181 catgtggttgctgggatttgaactcagaacctttggaagagcagtcagtgctcttaacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 catgtggttgctgggatttgaactcagaacctttggaagagcagtcagtgctcttaacca 592
Query: 241 ctgagccatctctccagccctacaaatcactcttataataaaacaataagaaaacctgat 300
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 591 ctgagccatctctccagccctacaaatcactcttataataaaatgacaagaaaacctgat 532
Query: 301 gcatgctttgctgctcattgctacagagtatatatgaagactaagtcctccaatgcttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gcatgctttgctgctcattgctacagagtatatatgaagactaagtcctccaatgcttta 472
Query: 361 aagtctccaag 371
|||||||||||
Sbjct: 471 aagtctccaag 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_o05.g1 MSMg01no083_o05.g1 CHROMAT_FILE:
MSMg01no083_o05.g1 PHD_FILE: MSMg01no083_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:45 2005
(472 letters)
>mm_chr4_115386844_115387715
Length = 872
Score = 866 bits (448), Expect = 0.0
Identities = 466/472 (98%)
Strand = Plus / Plus
Query: 1 aatcccaatggatcccatgccctcttttggcctcttcaggaaccaggtgcagaagtggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcccaatggatcccatgccctcttttggcctcttcaggaaccaggtgcagaagtggta 260
Query: 61 cacagacatatatgcaagcaaaataaccatatacataaagtaaaataaaaataaaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacagacatatatgcaagcaaaataaccatatacataaagtaaaataaaaataaaaattt 320
Query: 121 taagaatacatcttcaaagccaaaccttatatcaatcaataacaagctgagaaactgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagaatacatcttcaaagccaaaccttatatcaatcaataacaagctgagaaactgttc 380
Query: 181 caggttaaagaagaagaatagagaaagcaactgaataaaatgtgagatctttgattggat 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 caggttaaagaagaagaatagagaaagcaactgaatacaatgtgagatctttgattggat 440
Query: 241 cctaaaggatattaatgggacttaaacaacatgttaaagggtgcgaatgaatcaatgtta 300
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct: 441 cctaaaggatattaatggaacttaaacaatatgttaaagggtgctaatgaatcaatgtta 500
Query: 301 aatttcctgaatgtaataattatgttattgtcattcagaagaatgctcttctatgcctta 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatttcctgaaagtaataattatgttattgtcattcagaagaatgctcttctatgcctta 560
Query: 361 tatggaaatttcataatttgacagttaatttcaaatagttcaaaataaaataagatattg 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 tatggaaatttcataatttgacagttaatttcaaataattcaaaataaaataagatattg 620
Query: 421 atatttatatgcaaatagagggctaaataaaatgttgcaagagtgtgtgtga 472
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atatttatatgcaaatagagggctaaataaaatgttgcaagagtgtgtgtga 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
