BAC Information

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BAC

Clone NameMSMg01-083P03
Chromosome4 (Build37)
Map Location 106,672,763 - 106,760,536
singlet/doubletdoublet
Overlap geneSsbp3, Mrpl37, 2810410C14Rik
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11
Downstream geneCdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083P03.T7 (MSMg01no083_p03.b1)MSMg01-083P03.TJ (MSMg01no083_p03.g1)
ACCAG303932AG303933
length703726
length of high quality
(start - end)		588 (44 - 631)227 (73 - 299)
definitionCHROMAT_FILE: MSMg01no083_p03.b1 PHD_FILE: MSMg01no083_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:49 2005CHROMAT_FILE: MSMg01no083_p03.g1 PHD_FILE: MSMg01no083_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,759,958 - 106,760,536)(106,672,763 - 106,672,989)
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGTAGACCTGCAGGTCAGGCTGGCCTCAAACTCAGAAATCTGCCT
GCCTCTGCCTCCTAAATGCTGGGATTAAAGGCGTGTGCCACCACTGCCTG
GCCCTAGAACTGTTCTTAAACACAGATTGGGGAAAAGAAAATAACAAAGC
AGCTACCAGGGAACCAACACCTGGATTTCATCTCTCTCCATCAGGTTCTG
TGCTTGCAGCTGAGCTATCTCAATAGAAAACATTATTTCAGAGTTTTATA
ATTCCCAAGTACAAGTATTGTCCCAACCCCAAATCTTCTTGCTTTTATCA
GTCTGTGTGTGTACACACTGAGGACAATCTGTAGGAGTTGACTCTCTCTC
TTCACCCTGTGGGTTCCAGGGTTCAAACTCAGGTTGTCTGGCTTGCCGGC
AAGCACTGTTAGCTGCAAAGGGATCTTGCTAGCCCTGGACTTGTCCTGTT
ACTATGTGCAGCTTATTCCATTATGACTTTTAAAACATTTACTCTATGCT
GGTACATGGAGACCCGATCCACTCGTTTTAACTGCAGACTGATATCCCAC
TGGGATCGCCACTGGAACTAGGTGTGGCGGAGCACATGGTCTTTAACTTA
GCATCCTCGAGGCTCTAGAATCAGTCCCCCACACCGAAACAAAACAAAAG
AAC

ATGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCAGTGGTCTTTGCTGTAGTGACATGA
CCAGTGACTCGGAGACATGGTTTACCTAAGTCATTTGGTAGGAAGCTCTC
ATCAATAGCAACAGCAGCATCTAGACATTCTCAGATCCCGAGTTGGGGTA
TGCTTAGGAGCAGTGTGTTCTGAGAAGTGTGGCTGTGTGCAGACATGTAT
GTGTGTATGGTATTTGGATGAGGGCTAGCGGNAAGTTAGAGGAAGACTGN
CGAGGAAGGCTGGGGCATACTTTATCTTACTCTTGTAAGGTACTATTATT
GCAGGATCTCAGGTCTTCAGATTTTTGTCTCTGTATTTTCTTCTTTTCTT
TCTAGATTTACCCCACCATGTCCGAGCCGGCTGCCGCGTTCCCTCTTCTT
TTCTTTTTCTTTCTTTTTTATCTCCTCCTTCCTCTCTTTCTCTTCTCCTC
TCTTATTTGTTTTCTTGTTTTTCTTGTTACTTTTCTTGTTTTTCTCGGGC
CCCCTGCCTCTTGTTCGTTTTCTCCCTCGGTTATTTTTTTTTTCCTCCCC
TCTTTTTTATTTATTTCCCTCCCTTTATTTTCTTCGCGCTCCCCTTTTCT
CATATCTTCCCTCTCCTTCCCACTCCCCACCCACTTCCCCTCTTTCTCCG
CCTTTCTCTTTCCCTTCCAACCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_p03.b1 MSMg01no083_p03.b1 CHROMAT_FILE:
MSMg01no083_p03.b1 PHD_FILE: MSMg01no083_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:49 2005
         (588 letters)



>mm_chr4_106759894_106760879
          Length = 986

 Score = 1058 bits (547), Expect = 0.0
 Identities = 572/581 (98%), Gaps = 2/581 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactgtagacctgcaggtcaggctggcctcaaactcagaaatctgcctgcctct 63
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggaattcgctgtagacctgcaggtcaggctggcctcaaactcagaaatctgcctgcctct 584

                                                                       
Query: 64  gcctcctaaatgctgggattaaaggcgtgtgccaccactgcctggccctagaactgttct 123
           ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 583 gcctcctaagtgctgggattaaaggcgtgtgccaccactgcccagccctagaactgttct 524

                                                                       
Query: 124 taaacacagattggggaaaagaaaataacaaagcagctaccagggaaccaacacctggat 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 taaacacaggttggggaaaagaaaataacaaagcagctaccagggaaccaacacctggat 464

                                                                       
Query: 184 ttcatctctctccatcaggttctgtgcttgcagctgagctatctcaatagaaaacattat 243
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttca--tctctccatcaggttctgtgcttgcagctgagctatctcaatagaaaacattat 406

                                                                       
Query: 244 ttcagagttttataattcccaagtacaagtattgtcccaaccccaaatcttcttgctttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttcagagttttataattcccaagtacaagtattgtcccaaccccaaatcttcttgctttt 346

                                                                       
Query: 304 atcagtctgtgtgtgtacacactgaggacaatctgtaggagttgactctctctcttcacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atcagtctgtgtgtgtacacactgaggacaatctgtaggagttgactctctctcttcacc 286

                                                                       
Query: 364 ctgtgggttccagggttcaaactcaggttgtctggcttgccggcaagcactgttagctgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctgtgggttccagggttcaaactcaggttgtctggcttgccggcaagcactgttagctgc 226

                                                                       
Query: 424 aaagggatcttgctagccctggacttgtcctgttactatgtgcagcttattccattatga 483
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 225 aaagggatcttgctagccctggacttgtccttttactatgtgcagcttattccattatga 166

                                                                       
Query: 484 cttttaaaacatttactctatgctggtacatggagacccgatccactcgttttaactgca 543
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 cttttaaaacgtttactctatgctggtacatggagacccgatccactcgttttaactgca 106

                                                    
Query: 544 gactgatatcccactgggatcgccactggaactaggtgtgg 584
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gactgatatcccactgggatcgccactggaactaggtgtgg 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 986
Length adjustment: 10
Effective length of query: 578
Effective length of database: 976
Effective search space:   564128
Effective search space used:   564128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no083_p03.g1 MSMg01no083_p03.g1 CHROMAT_FILE:
MSMg01no083_p03.g1 PHD_FILE: MSMg01no083_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:50 2005
         (227 letters)



>mm_chr4_106672563_106673189
          Length = 627

 Score =  426 bits (220), Expect = e-124
 Identities = 225/227 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagtggtctttgctgtagtgacatgaccagtgactcggagacatggtttacctaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagtggtctttgctgtagtgacatgaccagtgactcggagacatggtttacctaagtc 260

                                                                       
Query: 61  atttggtaggaagctctcatcaatagcaacagcagcatctagacattctcagatcccgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttggtaggaagctctcatcaatagcaacagcagcatctagacattctcagatcccgag 320

                                                                       
Query: 121 ttggggtatgcttaggagcagtgtgttctgagaagtgtggctgtgtgcagacatgtatgt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggggtatgcctaggagcagtgtgttctgagaagtgtggctgtgtgcagacatgtatgt 380

                                                          
Query: 181 gtgtatggtatttggatgagggctagcggnaagttagaggaagactg 227
           ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 gtgtatggtatttggatgagggctagcggtaagttagaggaagactg 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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