Query= MSMg01no083_p18.b1 MSMg01no083_p18.b1 CHROMAT_FILE:
MSMg01no083_p18.b1 PHD_FILE: MSMg01no083_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:53 2005
(427 letters)
>mm_chr4_104720593_104721420
Length = 828
Score = 781 bits (404), Expect = 0.0
Identities = 422/428 (98%), Gaps = 1/428 (0%)
Strand = Plus / Plus
Query: 1 atcattggttaatttattggacagtcagctaccgacagctcagatccagacaacttggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcattggttaatttattggacagtcagctaccgacagctcagatccagacaacttggct 260
Query: 61 ctgcaccacaatgcctctcactatttttggcttgcccttcttctatgttaacattcccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcaccacaatgcctctcactatttttggcttgcccttcttctatgttaacattcccaa 320
Query: 121 tagcacatttccaaaatcaaactctggtttga-gtttaaaaaaaaaatgtctacagctcc 179
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 321 tagcacatttccaaaatcaaactctggtttgaggttaaaaaaaaaaatgtctacagctcc 380
Query: 180 agtggaaagaacataatctgtttcactagagtgctgcccctaatttaccttagttgctgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggaaagaacataatctgtttcactagagtgctgcccctaatttaccttagttgctgc 440
Query: 240 atcaatcaagctccttactaaatcaatgtgttccctaatactgatcagtgaaattctaac 299
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 atcacccaagctccttactaaatcaatgtgttccctaaaactgatcagtgaaattctaac 500
Query: 300 ctcaaactggtggtaaaaggaagtggttatttcagggagatctggccctgaggtggaact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaaactggtggtaaaaggaagtggttatttcagggagatctggccctgaggtggaact 560
Query: 360 cttgtaaagaacatcaaagccctataaaagactatcccagagagatcccattaccctttg 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 cttgtaaagaacatcaaagccctataaaagactatctcagagagatcccattaccctttg 620
Query: 420 accacaca 427
||||||||
Sbjct: 621 accacaca 628
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space: 342342
Effective search space used: 342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_p18.g1 MSMg01no083_p18.g1 CHROMAT_FILE:
MSMg01no083_p18.g1 PHD_FILE: MSMg01no083_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:53 2005
(322 letters)
>mm_chr4_104882820_104883543
Length = 724
Score = 555 bits (287), Expect = e-162
Identities = 315/325 (96%), Gaps = 4/325 (1%)
Strand = Plus / Minus
Query: 1 gtatttttctcttggaataaaacgaagggacatcaaggggcaaatga--acacatacaat 58
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 524 gtatttttctcttggaataaaatgaagggacatcaaggggcaaatgaacacacatacaat 465
Query: 59 tctcctaagcacttttacaaaatactgaaattacatttgtgaaattgcttccagccttgg 118
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 464 tctcctaagtacttttacaaaatactgaaattacatttgtgaaattgcttccagccctgg 405
Query: 119 caaaata-acccagggaacagaaactctaaatatctgctaaattatcctttctaagagca 177
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 caaaatacacacagggaacagaaactctaaatatctgctaaattatcctttctaagagca 345
Query: 178 aaacaaaaacaagcaaaggaagagcggaggggagtgctgtgtatgaataagtgagatcca 237
||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||
Sbjct: 344 aaacaaaaacaagcaaaggaagagcggaggggagtgccgtgtttgaat-agtgagatcca 286
Query: 238 ggtcgaatgattttataggtcggggcccaccctgtagcactgcatcctgggtaatgggga 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ggtcgaatgattttataggtcggggcccaccctgtagcactgcatcctgggtaatgggga 226
Query: 298 gccagaggcctctgaacttggaagg 322
|||||||||||||||||||||||||
Sbjct: 225 gccagaggcctctgaacttggaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 724
Length adjustment: 9
Effective length of query: 313
Effective length of database: 715
Effective search space: 223795
Effective search space used: 223795
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
