BAC Information

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BAC

Clone NameMSMg01-084A09
Chromosome4 (Build37)
Map Location 74,982,322 - 74,982,497
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529
Downstream geneLOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084A09.T7 (MSMg01no084_a09.b1)MSMg01-084A09.TJ (MSMg01no084_a09.g1)
ACCAG303990AG303991
length764741
length of high quality
(start - end)
178 (68 - 245)49 (68 - 116)
definitionCHROMAT_FILE: MSMg01no084_a09.b1 PHD_FILE: MSMg01no084_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:56 2005CHROMAT_FILE: MSMg01no084_a09.g1 PHD_FILE: MSMg01no084_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTTCTCAGAGAATCCGCGGAATTC
TGCCATTGTACCTGGNTGATCATGCTATCTAGCCTATAGAGATCATTCTA
CTTGAGTTCTCCAAGAAATTTTATAGCTCTCCTATAGTTGAATACTTGAA
CTAAAGAGCAACAGCTGGCCTGACCTGCCTTAACCAGTCACATCTGGACT
TCACCTGTTCACCACAGAATACCAGTGTCTTAGTGTTTTGTGATAAATGG
TACCCATTTGAATCCATATGAAGCATGTATAGTAACCAGGCAGTTTATTC
CTATGAGCACTGGCTACATTATTACCCCTGTACTATGGTGCACTCTATAT
TCCTTGTTATTTGTTAAATGCATTCATTATAATAATAAGTTCAAGTGTAT
CTCTTGTTTATTTATGTAGTCATGACACAGAAATATACCTTAATTCTTAC
TTCTTATGATAATCTACTCCATGTACTCTAAATAATTACGAGAAAACTTA
ATAGATATTATATCTTCTTTCTGCATCTAAATAATACTAAACAAGACTAA
TTTAAACATGAATTAGCAATATTTTTTATCTACTTACATTATGTTTTAAA
ATATTATGCCATTTTCTTTATAGAAGTCTATCCCTCAAAATACCCTTTCA
ATATATGATCCAACATTACCCTCTATAAATTATTTCCCATGGGCTAAGAT
CAGACAGGCCTTATTTGATCAGATGGTCTATTTTACTTCACCACAACACA
CTTCCTCTACTAAA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGGACTAATCTCTTACTTTCACAAGTGTAAC
TACAGATGTGCTTGGAAACAGGCTAGTCTTGGAGATCTCAGAGTAATACA
CGTGAGGAACAAGCTTTAAGATGAAGAAAAAAAAAGCATCATTTAAAAGA
AACAATGTGTGTGCACTTTTCCTGCCATTTAAACAATGAACGCTCTTAAT
ATCAGCTTCTTAAACATTCACTTTATATCTAACTGCTAATATTAAGATCT
AAACAGAATGAGAGGATTAATAATTACTTCTCTAATATAGCAAATTTGAA
ATGAGCATCTCATACACCACGTTTTGGCTGATTTAAAGACCTTACTTGGT
AATTTAAATAACAATCTTGGACTTTTTGTAGTTAGGATCATCTATCCCAA
TTCTCTCAGGTCATGAAAATAAGGAAACCAAAACAGTTCAATTATTTCCC
AGGCTCTTCAACTACAATATGGATATAACTGAGAATATAAAATATCTTTT
ATGCCACCAAACCCAAGCTGGATTCTACTGAAATATATTTTTCTCTGGTC
TATCTTAAAAATAAATATTTTCCCAATTGTAAAATACCAGAATACCTTCA
TTTATACCATTGAAACCCATTATTTGATTAATTTACTGATTCTATTTTAT
AAAGTTACTTTATATGCGAAAGAAATCCGAACTGCCTCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_a09.b1 MSMg01no084_a09.b1 CHROMAT_FILE:
MSMg01no084_a09.b1 PHD_FILE: MSMg01no084_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:56 2005
         (178 letters)



>mm_chr4_74982122_74982699
          Length = 578

 Score =  310 bits (160), Expect = 4e-89
 Identities = 172/176 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatcatgctatctagcctatagagatcattctacttgagttctccaagaaattttatagc 60
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 gatcatgctatctagcccatagagatcattccacttgagttctccaagaaattttatagc 260

                                                                       
Query: 61  tctcctatagttgaatacttgaactaaagagcaacagctggcctgacctgccttaaccag 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tctcctatagttgaatacttgaactaaagagcaacagctggactgacctgccttaaccag 320

                                                                   
Query: 121 tcacatctggacttcacctgttcaccacagaataccagtgtcttagtgttttgtga 176
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tcacatctggacttcacctgttcaccacagaataccagtgtcttagtggtttgtga 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)