XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
CATTAGGAGCAGTGTGAGCATTTAAGACCTCAAAGCCCTACTTTTATAGT
GACATACTTTCTATAGCAAGGCCACACATCCCTGAATAAGGCCACACCCC
TTTCTTTTTTTTTTTTTTTAGAATTAACTTATTTTATGTTATGAGTACAT
AGTAGCTGTCTTTAGACACTTGAGAAGAGGGCATCAGATCCCATTACAGA
TGGTTATGAGCCACCATGTGGTTGCTGGGAATTGAACTATGGGGGCCAAA
CCTAAACCTATTAAAACTAGCACAGGGTTTTGCTTTTGTTTTTCCTGATT
TTTTTTTTTAAGAAGAGAGAGTGAGGCAGATCAAGAGTACAATATTTTGT
GGGTAAGGAGGTGGAGAGGATCCCGGAGCGTTTTGGTGAGGAGAAAGAAT
ATGACCAGAATACATTGTATGGTTTGTTGTTGTTGTTGTTGTTTTACCAA
CTAGGATAGCTTTCTTCTTCTTACTTGGAAGACTAGTGTCTCTTATGAGA
ATTTTCCCTGTATGCCATAGTAGAATCTTTTTGAGCTGAGATGGCAATGG
AGCATGGAGTAGTGTACCAATAAGGAGGATTCCGACAAAAAGATAAAAAA
TTTGAAAGTATTGGGTCCTAATACAGTCTCCACTGATAATATACAGAGAC
ATCTTGCCAGCGTCATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATCTGAGGAATACTGAATGACTGAGAAGCA
CCTGAAAAAATGCTCAGCATCCTTAATCATCAGAGAAATGCAAATCAAAA
CAACCCTGAGATTCCATCTCACACCACTCAGAATGGCTAAGATCAATAAA
TCAGGTGACAGCAGATGCTGGCGAAGATGTGGTGAAAGAGGAACACTCCT
TCATTGTTGTTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGATAATTGGACATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACAC
ATGCTCCACTATATTCATAGCAGCCTTATTTATAATATCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATAGAAAAAATGTGGTAC
ATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAN
ATTGCATACACTAGCAAGATTTCGCTGAAAGGACCCAGTTATAGCTCTCT
CTTGTGAGACTATGCCGAGACCTAGCAACACAGAAGTGGATGATCACAGT
CAGTTATTGGATGGGTCACACGGCTCCTAATGGAGGAGCTAGAGAAATTA
CCCAAGGAGCTATAG

Query= MSMg01no084_a14.b1 MSMg01no084_a14.b1 CHROMAT_FILE:
MSMg01no084_a14.b1 PHD_FILE: MSMg01no084_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:57 2005
         (619 letters)



>mm_chr4_81848242_81849258
          Length = 1017

 Score = 1104 bits (571), Expect = 0.0
 Identities = 604/619 (97%), Gaps = 9/619 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacattaggagcagtgtgagcatttaagacctcaaagccctacttttatagtga 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 gaattccacattaggagtagtgtgagcatttaagacctcaaagccctacttttatagtga 824

                                                                       
Query: 65  catactttctatagcaaggccacacatccctgaataaggccacacccctttc----tttt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 823 catactatctatagcaaggccacacatccctgaataaggccacacccctttctttttttt 764

                                                                       
Query: 121 tttttttttttagaattaacttattttatgttatgagtacatagtagctgtctttagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tttttttttttagaattaacttattttatgttatgagtacatagtagctgtctttagaca 704

                                                                       
Query: 181 cttgagaagagggcatcagatcccattacagatggttatgagccaccatgtggttgctgg 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 703 cttgagaagagggcatcagattccattacagatggttatgagccaccatgtggttgctgg 644

                                                                       
Query: 241 gaattgaactatgggggccaaacctaaacctattaaaactagcacagggttttgcttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaattgaactatgggggccaaacctaaacctattaaaactagcacagggttttgcttttg 584

                                                                       
Query: 301 tttttcctgatttttttttttaagaagagagagtgaggcagatcaagagtacaatatttt 360
           |||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tttttcttgattttttttt--aagaagagagagtgaggcagatcaagagtacaatatttt 526

                                                                       
Query: 361 gtgggtaaggaggtggagaggatcccggagcgttttggtgaggagaaagaatatgaccag 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 525 gtgggtaaggaggtggagaggatcccggagcattttggtgaggagaaagaatatgaccag 466

                                                                       
Query: 421 aatacattgtatggtttgttgttgttgttgttgttttaccaactaggatagctttcttct 480
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 465 aatacattgtatggtttgttgttgttgttgtt---ttaccaactaggatagctttcttct 409

                                                                       
Query: 481 tcttacttggaagactagtgtctcttatgagaattttccctgtatgccatagtagaatct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tcttacttggaagactagtgtctcttatgagaattttccctgtatgccatagtagaatct 349

                                                                       
Query: 541 ttttgagctgagatggcaatggagcatggagtagtgtaccaataaggaggattccgacaa 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 348 ttttgagctgagatggcaatggagcatggagtagtgtaccaataaggaggattcagacaa 289

                              
Query: 601 aaagataaaaaatttgaaa 619
           |||||||||||||||||||
Sbjct: 288 aaagataaaaaatttgaaa 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1017
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1007
Effective search space:   613263
Effective search space used:   613263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)