XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCAG
TATATCAATTATTTCTCAATTGCCCTAACCGATTTACTTTCAATAATTAA
TTATGAATTTCATAATTACTTTAATTATGTCAGTTGCAAACCTTTGTGTC
TGGATATAAATTGACCCCTTAGAATCAATCTCTTTAAAATATTATTAAAT
TTTTTTTTTTACTTCCCTGGATCAATGAAATTTAAACCATTTACTCTTTC
AGCTTGCCTCTAGTCCATCTGCATTCAGATCGCCTTGAATACCACTGAAC
TTCAGCAATCTCTTTGTCGTTTTACATTTTTATTTGCTCCCTTATCCATC
ATTCATTTGATATAAGTAGTTTTTAATATAATATTTGTTCTCTAAGAAGA
GGTCAATTTTTCCTCAGGTAATTATTTCTTGCTAATTCTCTGTGAGCAGT
ACAAATTCTACAAGTCAGTGTCTGCAGAAGGCATGTAGGGCCTTGTGCTC
ACAGATAAACATGAGGGAAACAAGGAAGGTTAGCAGTGTTTCTTCCTCAA
AGGGAGAGATGTATAACCTGGTCTGTGTTCAGAAGGTTGGGGACAGATGT
TAATAGCTTGGTGACCTCTGTGATATTTGTGTGGCCATGGTACATTGACT
GCCACAGACATTTTATCTTATACTTGCTTGTCTCTGTCAATCTATAGTCC
AGGTCTTTTATCCAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAGC
GGAGGCCCGCGCCATCTTATAATGGCGATTTCTCGCTGCACACATGGCTC
TCCACACACATGAAACAGCTATATAGGGTCCTTTCAGCAAAATCTTGCTG
GCATGTTCAATAGTGTCTGCATTTGGTGGCTGATTATGGGATGGAACCCT
GGGTTGGGTAGTCTCTGGATGGACCTTGAATTCCTAATCTTTCCAAGACT
ATTATCATGAAGGGGTGTTGGATTTTGTCAAATACTTTCCTACTATCTAA
TGAAATGATCATGTGGGTTTATTTTTTTAAGTTTATTTATATCGTGGACA
ATGTGTATAGATTTCTCTATATTAAACCATCCCTGCATTCCTACTCTATC
ATGATGGATGAACATTTTGATATGTCCTTGGATTCTGTTTGTGAGAATCT
TATTGAGTAATTTTGCATGGATATTCTTAAGGGAAATTGGTCTGAAGTTC
TTTTTCTTTGGTATTTGTATGGTTTAGGTGTCGGAGTAATTGCAGCTTCA
TAGAATGAATTGGATAGCCTTCCTTCTGTTTCTATTTTGCAGAGTAATTT
GAATAATATTATTATTAAGGCTTCTTTGAAGCTTTGCATTATATCCATCT
TGA

Query= MSMg01no084_d10.b1 MSMg01no084_d10.b1 CHROMAT_FILE:
MSMg01no084_d10.b1 PHD_FILE: MSMg01no084_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:11 2005
         (547 letters)



>mm_chr4_38180135_38181081
          Length = 947

 Score = 1004 bits (519), Expect = 0.0
 Identities = 536/543 (98%), Gaps = 3/543 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttcaccagtatatcaattatttctcaattgccctaaccgatttactttcaataattaatt 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 ttcaccagtatatgaattatttctcaattgccctaaccgatttactttcaataattaatt 750

                                                                       
Query: 68  atgaatttcataattactttaattatgtcagttgcaaacctttgtgtctggatataaatt 127
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atgaatttcataattactttcattatgtcagttgcaaacctttgtgtctggatataaatt 690

                                                                       
Query: 128 gaccccttagaatcaatctctttaaaatattattaa---atttttttttttacttccctg 184
           ||||||||||||||||| ||||||||||||||||||    ||||||||||||||||||||
Sbjct: 689 gaccccttagaatcaatatctttaaaatattattaatttttttttttttttacttccctg 630

                                                                       
Query: 185 gatcaatgaaatttaaaccatttactctttcagcttgcctctagtccatctgcattcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gatcaatgaaatttaaaccatttactctttcagcttgcctctagtccatctgcattcaga 570

                                                                       
Query: 245 tcgccttgaataccactgaacttcagcaatctctttgtcgttttacatttttatttgctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcgccttgaataccactgaacttcagcaatctctttgtcgttttacatttttatttgctc 510

                                                                       
Query: 305 ccttatccatcattcatttgatataagtagtttttaatataatatttgttctctaagaag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccttatccatcattcatttgatataagtagtttttaatataatatttgttctctaagaag 450

                                                                       
Query: 365 aggtcaatttttcctcaggtaattatttcttgctaattctctgtgagcagtacaaattct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aggtcaatttttcctcaggtaattatttcttgctaattctctgtgagcagtacaaattct 390

                                                                       
Query: 425 acaagtcagtgtctgcagaaggcatgtagggccttgtgctcacagataaacatgagggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acaagtcagtgtctgcagaaggcatgtagggccttgtgctcacagataaacatgagggaa 330

                                                                       
Query: 485 acaaggaaggttagcagtgtttcttcctcaaagggagagatgtataacctggtctgtgtt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acaaggaaggttagcagtgtttcttcctcaaagggagagatgtataacctggtctgtgtt 270

              
Query: 545 cag 547
           |||
Sbjct: 269 cag 267


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)