CTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGA
TAAACCCTTAGCTAGACTCACTAAAGGGCAAAGGGACAAAATCCTAATCA
ACAAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATC
CAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGA
AAACCTGGACGAAATGGACAAATTTCTGGAAAGATACCAGGTACCAAAGT
TGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATCCCTTTAAGAA
ATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGA
CGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAG
TTCTGCACAAACTATTTCCTTTTCCTTTTTAATTTATTTTTTTAACACTC
CAGATTTTATACCCCGCTCAGTCCACACTGGGACTGTTCCACATCTCAGT
CCTCCTCTCCTCTTCCCTGTCTCCATGAGGATGTCCCCACCCCTAACCTC
TCAATCCCCTAACCCCCACACCACCTGACCTCTAAACTCCCTTTGGCCTC
TAGTCTTTTGATGGTTAGATGCATCATATCTGATTGATTCCG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTTGAAGGAAGCTCTGGGGG
GGGGGGGGGTGGCGCGTCGGGTTGGTTGATACTGTTGAAAACCCCTTCAG
CTCCTTAAGTTCTTTCTCTAACTCCTTCATTGGGGACCCTGTGCTCAGTC
CAATAGTTGGCCGTAAGCATCCACTTCTGTATTTGTCAGGCTCTGGCAGA
GCATCTCAGCAGACTGTTATATCAGGCACCACTCAGCAAGCATTTCTTGG
CATTTTTAAGTTCGGTTAGATCATATCACTCAATATTCAATGGTAACCAA
GTCCACTAAGGTAAAAAGCCTAGGTCTTTCCAAGGCCCAAAACCATCTTC
AGGACTGACATCTCATTATCCATTCTCACTTATTAGCCCTGGGTTTCCTT
ACATCACCTCAAGTAGCCTAGACACAAACTTTACTTTTTCTGCTTCCTTT
GTCTGAAATGTTCTTTCGCCAAATAATTGTATGAATTTCTTCATATCCCT
TTCTTGCTTCCAACGAGATAAATCCAAACTTAAGGCATCCAAAAGCCCTC
CAAGAATCTATACAGAAAGTATTCAATGGTTCTCTATAACTACTCTCAAT
AAAATATAGCCCAAACAGATGTGGATGCCACAGACAA

Query= MSMg01no084_e02.g1 MSMg01no084_e02.g1 CHROMAT_FILE:
MSMg01no084_e02.g1 PHD_FILE: MSMg01no084_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:14 2005
         (524 letters)



>mm_chr4_28578690_28579613
          Length = 924

 Score =  978 bits (506), Expect = 0.0
 Identities = 517/524 (98%), Gaps = 6/524 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggttgaaggaagctctggggggggggggggtggcgcgtcgggttggttgatactgtt 60
           |||||||||||||||||||||||||||||||      |||||||||||||||||||||||
Sbjct: 207 tttggttgaaggaagctctgggggggggggg------gcgtcgggttggttgatactgtt 260

                                                                       
Query: 61  gaaaaccccttcagctccttaagttctttctctaactccttcattggggaccctgtgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaccccttcagctccttaagttctttctctaactccttcattggggaccctgtgctc 320

                                                                       
Query: 121 agtccaatagttggccgtaagcatccacttctgtatttgtcaggctctggcagagcatct 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 agtccaatagttggccgtaagcatccacctctgtatttgtcaggctctggcagagcatct 380

                                                                       
Query: 181 cagcagactgttatatcaggcaccactcagcaagcatttcttggcatttttaagttcggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcagactgttatatcaggcaccactcagcaagcatttcttggcatttttaagttcggt 440

                                                                       
Query: 241 tagatcatatcactcaatattcaatggtaaccaagtccactaaggtaaaaagcctaggtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagatcatatcactcaatattcaatggtaaccaagtccactaaggtaaaaagcctaggtc 500

                                                                       
Query: 301 tttccaaggcccaaaaccatcttcaggactgacatctcattatccattctcacttattag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttccaaggcccaaaaccatcttcaggactgacatctcattatccattctcacttattag 560

                                                                       
Query: 361 ccctgggtttccttacatcacctcaagtagcctagacacaaactttactttttctgcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgggtttccttacatcacctcaagtagcctagacacaaactttactttttctgcttc 620

                                                                       
Query: 421 ctttgtctgaaatgttctttcgccaaataattgtatgaatttcttcatatccctttcttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttgtctgaaatgttctttcgccaaataattgtatgaatttcttcatatccctttcttg 680

                                                       
Query: 481 cttccaacgagataaatccaaacttaaggcatccaaaagccctc 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttccaacgagataaatccaaacttaaggcatccaaaagccctc 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)