BAC Information

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BAC

Clone NameMSMg01-084E23
Chromosome4 (Build37)
Map Location 78,818,909 - 78,829,960
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996, LOC100040026
Downstream geneLOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084E23.T7 (MSMg01no084_e23.b1)MSMg01-084E23.TJ (MSMg01no084_e23.g1)
ACCAG304202AG304203
length727726
length of high quality
(start - end)		597 (42 - 638)548 (71 - 618)
definitionCHROMAT_FILE: MSMg01no084_e23.b1 PHD_FILE: MSMg01no084_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:18 2005CHROMAT_FILE: MSMg01no084_e23.g1 PHD_FILE: MSMg01no084_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,818,909 - 78,819,501)(78,829,413 - 78,829,960)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGCCTATGTAGGTTCCAATTTAGAAAGAAATACACTGAAAATGGCAGAA
AATTCTTTATTTTCTAAGTTACAATCTAAGATTGTCCATCAGTATTTTAT
GGAGACTCAGGTAGTTCATGTTTGCCATCTCATCTATACTAAGAGTAGCC
TCTATTGCATGATGTTGTAGAAGAATATACTAAAATTTAAAAACAGTCTT
TTGAATATTAAGACAAGTGGGCAGTACAATGTGCCCAAAACATTAAATCA
TAAATTTCTTATTCATTCCACTGATTTAATAATTTCTTTTATCTGAAGGG
ATTTCCTAAAATTCACATTTTATAATGTATTTACTAGAGTCATATAACAT
TTGTAGATGAAGCTTGTAAGAATTGATATACCCATCAGGATTTTATCTGC
ATGTTCCAATACAGTGAATCTCAAACTTTTAATACTGTGCTGATTCTCAT
CCATAAAATTATTTTTGTTGCAACATCATGACACAATTCAGTTACTATTA
TGAATCTTAACGTAAAATCTGTATTTTTTGAAAGTTTCAGGTGACCTCTA
TGAAAAGGCCATTCAATCTCTGAAGGGATTGCTATAATTCACAGGTTGAG
AAACACGGTTCTTAATAAACATGATGAACTGAATTATCCTATGATAGCTT
TGCGTTTCAAAGCTCAATCTGCAAAGA

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTTTACCAAGAAAAATGTTGCTTAATTTT
TAAAGTGGCCATATTTGGAAAAGGACATTTTTCAATATATGTACATGCAT
ATTTACATGCTTATATGTAGTAATTTATTTATATGTTTATATATGCATAT
AGCAAATAAGTTTAACTAATTATTTCATTACTTTTTGATGAATGACATAA
TTATGTCAAAATATCTTCAATAGATGCATGGCTTATAATAAGAAACTTGG
TTGTTTCAAGTTGAGTACCTTAGCACCCCCTTTTACTCTACATTCCCCAA
GCTAGATTGTTTCCTCTTACTCAAAGTCACTCTGTCCATTCATATTTGAA
ATTAAAATAAAGATTTTATTTTTATGAACCCCCTTGCTCTTCATTCCAGG
ATGCAGAATGCTGAACAGTTAAATCTTTTAACATCTCACCTCTGGGCCTA
GCAGGCTTCTTTCAGCATTCCAACATGGATTTCTGAGTGTGGACTCTGAG
TCATCTCTCCTCCAGCTAAACACTACTTCTGCACTACACTTAGTCTGTTC
TTGCAGAATTTTCCACACTCCATTGCTCTCCTGTGACTGGTAATCACTGC
TTGTTTTCAATGAACTACATCATTTTGTATTTTTCTTCTTTTCTTTGACC
CTCTCCCAAAGTCTCATCCATGCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_e23.b1 MSMg01no084_e23.b1 CHROMAT_FILE:
MSMg01no084_e23.b1 PHD_FILE: MSMg01no084_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:18 2005
         (597 letters)



>mm_chr4_78818705_78819701
          Length = 997

 Score = 1131 bits (585), Expect = 0.0
 Identities = 591/593 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcctatgtaggttccaatttagaaagaaatacactgaaaatggcagaaaattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcctatgtaggttccaatttagaaagaaatacactgaaaatggcagaaaattc 264

                                                                       
Query: 65  tttattttctaagttacaatctaagattgtccatcagtattttatggagactcaggtagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttattttctaagttacaatctaagattgtccatcagtattttatggagactcaggtagt 324

                                                                       
Query: 125 tcatgtttgccatctcatctatactaagagtagcctctattgcatgatgttgtagaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcatgtttgccatctcatctatactaagagtagcctctattgcatgatgttgtagaagaa 384

                                                                       
Query: 185 tatactaaaatttaaaaacagtcttttgaatattaagacaagtgggcagtacaatgtgcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatactaaaatttaaaaacagtcttttgaatattaagacaagtgggcagtacaatgtgcc 444

                                                                       
Query: 245 caaaacattaaatcataaatttcttattcattccactgatttaataatttcttttatctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaaacattaaatcataaatttcttattcattccactgatttaataatttcttttatctg 504

                                                                       
Query: 305 aagggatttcctaaaattcacattttataatgtatttactagagtcatataacatttgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagggatttcctaaaattcacattttataatgtatttactagagtcatataacatttgta 564

                                                                       
Query: 365 gatgaagcttgtaagaattgatatacccatcaggattttatctgcatgttccaatacagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatgaagcttgtaagaattgatatacccatcaggattttatctgcatgttccaatacagt 624

                                                                       
Query: 425 gaatctcaaacttttaatactgtgctgattctcatccataaaattatttttgttgcaaca 484
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gattctcaaacttttaatactgtgctgattctcatccataaaattatttttgttgcaaca 684

                                                                       
Query: 485 tcatgacacaattcagttactattatgaatcttaacgtaaaatctgtattttttgaaagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcatgacacaattcagttactattatgaatcttaacgtaaaatctgtattttttgaaagt 744

                                                                
Query: 545 ttcaggtgacctctatgaaaaggccattcaatctctgaagggattgctataat 597
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 ttcaggtgacctctatgaaaaggccattcagtctctgaagggattgctataat 797


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no084_e23.g1 MSMg01no084_e23.g1 CHROMAT_FILE:
MSMg01no084_e23.g1 PHD_FILE: MSMg01no084_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:18 2005
         (548 letters)



>mm_chr4_78829082_78830029
          Length = 948

 Score = 1036 bits (536), Expect = 0.0
 Identities = 545/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttaccaagaaaaatgttgcttaatttttaaagtggccatatttggaaaaggacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 agtttaccaagaaaaatgttgcttaatttttaaagtggccatatttggaaaaggacattt 820

                                                                       
Query: 61  ttcaatatatgtacatgcatatttacatgcttatatgtagtaatttatttatatgtttat 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 819 ttcaatatatgtacatgcatatttacatgcttatatgtaggaatttatttatatgtttat 760

                                                                       
Query: 121 atatgcatatagcaaataagtttaactaattatttcattactttttgatgaatgacataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 atatgcatatagcaaataagtttaactaattatttcattactttttgatgaatgacataa 700

                                                                       
Query: 181 ttatgtcaaaatatcttcaatagatgcatggcttataataagaaacttggttgtttcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttatgtcaaaatatcttcaatagatgcatggcttataataagaaacttggttgtttcaag 640

                                                                       
Query: 241 ttgagtaccttagcacccccttttactctacattccccaagctagattgtttcctcttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ttgagtaccttagcacccccttttactctacattccccaagctagattgtttcctcttac 580

                                                                       
Query: 301 tcaaagtcactctgtccattcatatttgaaattaaaataaagattttatttttatgaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tcaaagtcactctgtccattcatatttgaaattaaaataaagattttatttttatgaacc 520

                                                                       
Query: 361 cccttgctcttcattccaggatgcagaatgctgaacagttaaatcttttaacatctcacc 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cccttgatcttcattccaggatgcagaatgctgaacagttaaatcttttaacatctcacc 460

                                                                       
Query: 421 tctgggcctagcaggcttctttcagcattccaacatggatttctgagtgtggactctgag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tctgggcctagcaggcttctttcagcattccaacatggatttctgagtgtggactctgag 400

                                                                       
Query: 481 tcatctctcctccagctaaacactacttctgcactacacttagtctgttcttgcagaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 399 tcatctctcctccagctaaacactacttctgcactacacttagtctggtcttgcagaatt 340

                   
Query: 541 ttccacac 548
           ||||||||
Sbjct: 339 ttccacac 332


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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