BAC Information

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BAC

Clone NameMSMg01-084J03
Chromosome4 (Build37)
Map Location 146,356,161 - 146,356,263
singlet/doubletsinglet
Overlap genenone
Upstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084J03.T7 (MSMg01no084_j03.b1)MSMg01-084J03.TJ (MSMg01no084_j03.g1)
ACCAG304385AG304386
length1,019730
length of high quality
(start - end)
---103 (74 - 176)
definitionCHROMAT_FILE: MSMg01no084_j03.b1 PHD_FILE: MSMg01no084_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:38 2005CHROMAT_FILE: MSMg01no084_j03.g1 PHD_FILE: MSMg01no084_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGTTTGGGATAACCCCNCCATCGATCTAATAAATTTGGCGGCCGTTCT
AATAACGAAACTCACTTAAATAGTGTCTAAAAAAAAAAAAAAATTCCCCG
GGCCTGGGGTTTTATAACATTTTATCTCGTGAGGTACTCGGAGAACTAAC
TATTTTTTTTTTTTTTTTCCCCCCCACAACAGGAAACATAGGGATTAATG
GTTAAAGTCAACCTCCGATTATTCCGAANAACTTATTAATATAATTTGCG
GTAAGATTGTGGGGTTAATAAGGGGATATATCCTACAAATAGAGCAGATG
TGGCGGTTGTCTTATTCGGGTTACTTCATAAATAGTATGATAAATGTTAA
AATTCCCGACCGTAGTTAATTGGGGGAAATTAAAAAATAATTTTTTTGTG
CTTTATAATAAGAGCGGTAGACCACCCCCCCATATAAACTACTCTCATTT
TGGGCCGTTTTTGGTGGTTATCATGAAATATTTACTCTCTGCGAAAGAAA
ATTCGCTCGATGTTGCCGTGTGTGTGGGGTACAATTATTTTTTATCACTC
GTACTTATATATGGGGTGGGTCGCACTTTTCTGATGGAAAACTATTGCAC
CACATTTATAAAAATATTGTGGATGTAATAAATATCTTGTGTACATTATA
GACCCTTGTAATATCTGGGTTGGATATTGAAAATAAGTTGGAAACAACGA
CAGGGTGTACATATGGATGAGCTTATAGTAATGTACATAGGGAGGTCATT
ATTCACTTATCGGTCGTTAAACCTCCGGCAAATAACACTGTCACTTTAGA
GAGCTTAACTAATTTCGATTCTGCCTTTTATATATTAACCTCCACGATTT
CATATTGTATTTAGCGGCTGTTTATGGCAACCGCAATATTATGGTGGCTG
AACCTAGTTGTTGTGTTATAACATCGCGCCTTCTGTAACACGTATACAAG
CGAGTGTGTATACGCGCTTATTTACGGCGATGTAGCTCTCACCGTTTCGC
GCGNGTCCTATTTATTTAG
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTACAAGTGGGTAAGAGAATTATCATA
CATATGCTGGATGTAAACATCTTATCCAAAGATATAATTTACTGGTTTGA
ATTAAGGTCAGCCTACAAAAGAAATACAGACACGGCACTGGAAGCTCAGG
CCGATAGAGTGATTTTATAACTGACATACTGCTATATGTAGAAATATGGA
AATGTATTTAAATTGTTGGCGCTTTCAGCCTAAGTCAGACAAACATGAAT
TGTATAGGGAAACTGCCAATTCATAGAGATCTGAACAAAAAGCCTGCAGC
GGTTAAAAGGCAACACTGTAAAAGAATGACGAAGCGCAGTTATGGAAACC
CTTGCTGTCATCCACCATGGAACACGGAATTATGACTACACGACAGCATG
TATACCCATCCTCTTCCTTCCTCAGAACACACTTTAACCCTCCCGTATAC
ACGTTTTCTTGACTATGACTGCATGTTTTCCGTGATTTCACGATATGGTA
TTTACTGTTCGTACTCTGCGTAAATTTTCTCGTTGGGAACGGTCACTTCC
CCCTGAAAATTCGCCAGCCCCCCCGATAATTTAGCTCCTATCACACATCA
ATATTTCCCTCTTCCCCGACTTCTTGTTCCTACCCCCGCCCTTATCCCTT
CTACACCTATCACTCACGTTTTTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_j03.g1 MSMg01no084_j03.g1 CHROMAT_FILE:
MSMg01no084_j03.g1 PHD_FILE: MSMg01no084_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:38 2005
         (103 letters)



>mm_chr4_146355961_146356463
          Length = 503

 Score =  199 bits (103), Expect = 3e-56
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacaagtgggtaagagaattatcatacatatgctggatgtaaacatcttatccaaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctacaagtgggtaagagaattatcatacatatgctggatgtaaacatcttatccaaagat 244

                                                      
Query: 61  ataatttactggtttgaattaaggtcagcctacaaaagaaata 103
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ataatttactggtttgaattaaggtcagcctacaaaagaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)