Query= MSMg01no084_o16.b1 MSMg01no084_o16.b1 CHROMAT_FILE:
MSMg01no084_o16.b1 PHD_FILE: MSMg01no084_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:04 2005
(366 letters)
>mm_chr4_130964676_130965441
Length = 766
Score = 671 bits (347), Expect = 0.0
Identities = 359/363 (98%)
Strand = Plus / Plus
Query: 4 ggaattccaggtgctgccggaaatagccttataaggaaggggcaaggaaaactaacctgc 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggtgctgctggaaatagccttataaggaaggggcaaggaaaactaacctgc 263
Query: 64 ctagcaggtatgttacctctctggggaggcaagggtacaggcccaagtttgccagggtgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctagcaggtatgttacctctctggggaggcaagggtacaggcccaagtttgccagggtgg 323
Query: 124 gaggagggaggggaacagtcctcctcctgcagatctcaaaacaagatctctaaggtctgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaggagggaggggaacagtcctcctcctgcagatctcaaaacaagatctctaaggtctgg 383
Query: 184 gcacacctcaagccaactcttgctccaggcctgttcctccctgtcctaatcccacgcctc 243
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 384 gcacacctcaagctaactcttgctccaggcctgctcctccctgtcctaatcccacgcctc 443
Query: 244 cctggccccacagcctgggcctcagaaggccacaaaactagactgttcaagcctcaagac 303
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 444 cctggccccacagcctgggcctcagagggccacaaaactagactgttcaagcctcaagac 503
Query: 304 caggtaaggagaacatctagatttagttcaagtaccataggaagccaatcaagtgtccga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caggtaaggagaacatctagatttagttcaagtaccataggaagccaatcaagtgtccga 563
Query: 364 tgt 366
|||
Sbjct: 564 tgt 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_o16.g1 MSMg01no084_o16.g1 CHROMAT_FILE:
MSMg01no084_o16.g1 PHD_FILE: MSMg01no084_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:04 2005
(575 letters)
>mm_chr4_131058002_131058976
Length = 975
Score = 1083 bits (560), Expect = 0.0
Identities = 572/576 (99%), Gaps = 2/576 (0%)
Strand = Plus / Minus
Query: 1 aggttctcctactggagagcgtgcactttcctgattggaccaccccaacctcaaacaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 aggttctcctactggagagcgtgcactttcctgattggaccaccccaacctcaaacaagg 716
Query: 61 ccttttgcttccccaccagggaattgaactctagtctcccacctgacaagctgggatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ccttttgcttccccaccagggaattgaactctagtctcccacctgacaagctgggatgct 656
Query: 121 caaaactgcacgaatgaagaaaatctccatgattacacatatgctcaactctgcgtgcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 caaaactgcacgaatgaagaaaatctccatgattacacatatgctcaactctgcgtgcac 596
Query: 181 tggtaagcttcttgaagtacttctgtagctggaggtgtcaggtgaccctcagcttcccac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tggtaagcttcttgaagtacttctgtagctggaggtgtcaggtgaccctcagcttcccac 536
Query: 241 agagctgtactgaggaagggtt-gggaacagagtggggaaaagtacctgtcacaccccta 299
|||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct: 535 agagctgtactgaggaagggttaggg-acagagtggggaaaaatacctgtcacaccccta 477
Query: 300 actccactgcactgtgtggcaaggggggttccatgcctaaaactgccttctgggaactct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 actccactgcactgtgtggcaaggggggttccatgcctaaaactgccttctgggaactct 417
Query: 360 cttgggtggggaatcccacagagggagtgaagcaggttctagacgtcccaacttgctgta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cttgggtggggaatcccacagagggagtgaagcaggttctagacgtcccaacttgctgta 357
Query: 420 ggacatggtgaaatttctatacctcagagcctcagttttcccacttaaacagtgaggtaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggacatggtgaaatttctatacctcagagcctcagttttcccacttaaacagtgaggtaa 297
Query: 480 ctgaggtagcttggtgctcccgaatgccagccggtagagcttttctttcattgatgagag 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctgatgtagcttggtgctcccgaatgccagccggtagagcttttctttcattgatgagag 237
Query: 540 ggaacggcagggatgagagtcactttcccttcatgt 575
||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggaacggcagggatgagagtcactttcccttcatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
