BAC Information

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BAC

Clone NameMSMg01-084P14
Chromosome4 (Build37)
Map Location 137,176,813 - 137,177,292
singlet/doubletsinglet
Overlap geneUsp48
Upstream geneBC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2
Downstream geneRap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P14.T7 (MSMg01no084_p14.b1)MSMg01-084P14.TJ (MSMg01no084_p14.g1)
ACCAG304684AG304685
length723924
length of high quality
(start - end)
482 (36 - 517)44 (136 - 179)
definitionCHROMAT_FILE: MSMg01no084_p14.b1 PHD_FILE: MSMg01no084_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:08 2005CHROMAT_FILE: MSMg01no084_p14.g1 PHD_FILE: MSMg01no084_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCCGCTATACGACTCCTATATGCAGAGAATCCGCGGAATTCGTTTTG
ATTGCCCTCCCTCAGCAGCCTAAGCTTCGCGTCTGTTCCACTTAGCAAAT
CCATTCTGCAAAGTCTAGTCATCACTCTACAAGCAGAGCAGACAACCCGA
CTTACCAGTTAGTCTTGGACCTCCTCCATATCGACTATAGAAAATGTTAG
CCGCATATTCCGATATTCTCTTCATAATTGATATTTTATCAGGATGAAGC
TTGTCGTGGGAACACAGGCAAGCATTATTATCAATCGGTTTGGTGGGTGT
TGACTCGTCCAATCACTTCTGCAGCCATTCAAGAGAGACAAACTCATAGG
GCTCTGGGGGAGAAAGGAATGGGAACAGACCATGTAACTACAGGTTTTGA
CTGACTGACTGACTGATACAAGGCATTGTCCTCAAAAGACAGTCCACGCT
TTGTTCAAAGTCAGCAGGATCAGAAGACATGCTGGGAGGTGTCTGATGTG
TCAGCTAGCACTCCTGTGAGGCCCAGTTGTGCGTGGAAACATATCTGCAG
AGCCCTATGCGATCGGCGGGTATTATTAGCCACATTCTACAAGAGGCATC
CACTGAGAGAAAGAAGTGCCTTGCTTGAGAGTACAGCCCGAGCTTCCATG
AGGACACCGTATGCTGAACGGAAAGATTACCTCTTCTCGTGAGTATGTGA
TACCCATCTTGAAAACTAAATGA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTNTCCCCTC
TCNNNNCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGCCAGCCTTTGAGA
CGAGAGTCCCTGTTGCAATAAGGAGGGGTGGTAACGAAGGTATGAGATCA
TGCGAAGTTGTTGTTCTTTTTTCTCTTATCTTTTTCTTTCCTTTCTTCTT
GTTTTTCCTTTTTTTTCCTTTCTTCTTTTTTTCTTTTTTTCTTTTCTCTT
TTTTCTTCTTTCTTTTTTCTCCTTTTCTCCTCCCTTCTCCTCCCTTCCCC
CCTACTCCTTCTCTACTCTTTTTTTTTTTCTCCTTTTTTTTTCTTTTTTT
TTTTCCTCTCCTCTTCCTTTTTTCTTTTACTCTTTTTTCTTTCTTCTTTC
TTTCCTTCCTTCCTTTTCCCATCAATTACTTTTCCCCTTTCCTTTCTCTT
TTTTTCCCACCTTCTTTTTCTCTCTTTCCTTCCTTCTTTTTTTTTATTTT
CCCTCTTTTCTCCTTTTTCTTTTCTTTCTCCTCTTTTCATCTTTTTTTTT
TTCTTACTTTCTTTTCTCTCTTCTTCCTTCCTCTCTTTCTTTCTTCCCTC
TTTCTCCTCTTTTTCCTCTCTCTTTTTTCTTCCCCTCTCTTTATTTCCCT
CCTCTCTCTTCCTTTTTTTCTTTTCTTCTCTCTCTACCCCTTTTCGCTTT
TTTCCCCTCTTTCTCTTCTCTTCTTTCTCTTCCTTCTCGCCCTCCTCCTC
CTCTTCCTTCTCTCTTTTATTTCTTTTTCTTTCCCTTCTTTTCCTCTCTC
CCTTCTCTCTCCCTCTTATCTATCCCCTTCCTCTTTCTTTACTCTCCTCT
CTTCTTCTTCCTTCTTTTTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p14.b1 MSMg01no084_p14.b1 CHROMAT_FILE:
MSMg01no084_p14.b1 PHD_FILE: MSMg01no084_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:08 2005
         (482 letters)



>mm_chr4_137176611_137177492
          Length = 882

 Score =  905 bits (468), Expect = 0.0
 Identities = 477/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcgttttgattgccctccctcagcagcctaagcttcgcgtctgttccacttagca 62
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ggaattcgttttgactgtcctccctcagcagcctaagcttcgcgtctgttccacttagca 623

                                                                       
Query: 63  aatccattctgcaaagtctagtcatcactctacaagcagagcagacaacccgacttacca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aatccattctgcaaagtctagtcatcactctacaagcagagcagacaacccgacttacca 563

                                                                       
Query: 123 gttagtcttggacctcctccatatcgactatagaaaatgttagccgcatattccgatatt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gttagtcttggacctcctccatatcgactatagaaaatgttagccgcatattccgatatt 503

                                                                       
Query: 183 ctcttcataattgatattttatcaggatgaagcttgtcgtgggaacacaggcaagcatta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctcttcataattgatattttatcaggatgaagcttgtcgtgggaacacaggcaagcatta 443

                                                                       
Query: 243 ttatcaatcggtttggtgggtgttgactcgtccaatcacttctgcagccattcaagagag 302
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 442 ttatcaatcggtttggtgggtgttgactcgtccaaccacttctgcagccattcaagagag 383

                                                                       
Query: 303 acaaactcatagggctctgggggagaaaggaatgggaacagaccatgtaactacaggttt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acaaactcatagggctctgggggagaaaggaatgggaacagaccatgtaactacaggttt 323

                                                                       
Query: 363 tgactgactgactgactgatacaaggcattgtcctcaaaagacagtccacgctttgttca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tgactgactgactgactgatacaaggcattgtcctcaaaagacagtccacgctttgttca 263

                                                                       
Query: 423 aagtcagcaggatcagaagacatgctgggaggtgtctgatgtgtcagctagcactcctgt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagtcagcaggatcagaagacatgctgggaggtgtctgatgtgtcagctagcactcctgt 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)