BAC Information

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BAC

Clone NameMSMg01-085O14
Chromosome4 (Build37)
Map Location 9,534,995 - 9,535,269
singlet/doubletsinglet
Overlap geneAsph
Upstream geneEG666752, LOC666760, Chd7, LOC666782, LOC100039584, 4933402J24Rik
Downstream geneGdf6, 4930448K20Rik, LOC666840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085O14.T7 (MSMg01no085_o14.b1)MSMg01-085O14.TJ (MSMg01no085_o14.g1)
ACCAG305361AG305362
length1,1031,316
length of high quality
(start - end)
263 (20 - 282)272 (127 - 398)
definitionCHROMAT_FILE: MSMg01no085_o14.b1 PHD_FILE: MSMg01no085_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:20 2005CHROMAT_FILE: MSMg01no085_o14.g1 PHD_FILE: MSMg01no085_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAGTGTCCCCGNCAAGATGACTCTGAGGGTGGAGTAGCTACATCTTTAG
ATGAAAAAACTCCATTACAGTCTGAGGGTTCAAAGTTCTCAGCTTCAATA
GGGTTTTTCTACAAATCTCCATCCTAAATTACAAGATCCCATTACTCTTA
CAAAATTAACTTATTTCCTTTACATCCTGATGGCAGCTTCCCCTGCCTCC
TCTCTTCCCAGTCCTCCCCATGTCCTCTCCCCTCTCTCCACCTCCCTTTC
TCTTCACAAAAGGAGAGGCCTCCCATGACTATCCACTTTTTTTGGCATAC
CAAGTTGCAGTAGGATTATGTTCATCTTCTCCTATTGAGTCCAGAAAAGG
CCGCCAATCTATGTCTAAATAGCCTTAATGCAGTTAATGTATGTCAGAGA
TAGCCCTGCCCCAGTTGTTATGCCCCCTCCTTGAATACTAATCTGCTCTT
CTCGTACTTGTGTTTCGAGGTTCTCATGTCTATCTCATCTACGCTGTCTG
TTTGTTGGTTTCTGACTCAGTGTTCTTTTATGTTCATATTCCATTTTGAT
TTTTTATTTTTTTCTATTCTTCTCTTTTACTTCTTTTTTTTTCTACTCTT
TTTTTCTTCACTCAACTCTTTATGTATTTTTATTTTCTATCTTTTTTTTT
ATTTTTTCTTCCTTTTCTATTTTTTTTTTTATTTTCTACCTTTTCTCCTT
TTATATTTCTCTTATTTTTTATATTCCTCATATTTTATTCTTTTTCTCTT
TTCTCATTTTTTCTTTCATATTTCTTTTTTATACTTCATTTCTTTACTTT
TTTTACATATCCACTCTTACCTTTTATTCTATTTTTTTCTTCTCCATTTA
CATCTATTTTGTCTTCTTTTTCTATTTTCTTCTATTTATCTTCTCTTTAT
CTTCTATTTTTTTATTTACTTTTAATTCTCTCTCTATTTTCTCTTCTCTT
TTCACTTTTTCCTCTTCCTCTACTTTCGTTTTATTTTTTATCCACTTCTT
TTACTTCCTTTTCCTTCTCTCTCCAATTATCTATGTTTCTATTCTCTCTT
ACTAATCGTTTTTTTCTCTTTTCATATACTCTATTTCCTATTCATACTTT
CTA
TTTTCTATCACGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTAACATGCCCTGTGTGTACTGATTCCTGA
AGAAGGCCCTGTAATTTGTTCCCCCACTTCATCTTCAACATTCTGGATGT
CTAAAATAATTACAAATCATAAATAAATAAATAAACAAACAAACAATGCT
GAAGTGTTAATAGGAAATTCCAACACTTAAATATGGCATGGACACACATA
CTGCAATGACTACATTTGTCTGAGAGGCTCTGTATTTTCCTGTTCACATG
CTATTCACTCCCCTACATCAGGAAACGTAATACTTAAAATTCGCCTTATT
TGTTCAGTAGGTTTAAACATTAAGAAACTTTCCAAAAGACTTTTAAATAT
TTTTTTTTAGGCGTAAGGTTTTCCTTTAAGAAATAGTCACAGAGTGCCTG
CAGATATGCCTCACAGGTTAAGAGCACTGGCTGCTCTCCCAGAGGTCATG
AGTTTAATTCCCAGTAACCACATGGTGTCTCCAAACCATCTGTAATGAGA
CCTGACGTCCTCTTCTGTTGTGTCTGAAGACCACTACCGTGTACTCACAT
ACATAAAATAAATATATCTTTTTTAATAAAATAATACTATCATATATAAT
ATCTTTGTCCTTTTTAACTACTATATTTTCCTTTCATTTAATAATTCCTA
TTTTCTTATATAGTCCTACTTGTAATCATACTCTATTTATTACTCACTTA
TATCTATGTTTTATAACTTCTGATTTTCTTTATTTGTACTATTTTACTTC
TATGTATTTCCTGTCTAATTTCTATTTATTAATTCTTCTTCATCTTTCTT
TATTTTTCTCTTTACACTTTATACTTAAATTTTCTTTCTAACTCTTCTAC
TCACTATTATCTTTCACTAATTTTAACATCCATTTTTCTTTTCTTCATTT
TTTTTTCATTATCTCTTTCTTATATTTATCCTATTATTTTAATTTATCTA
TTATTTGTTATTTTAATCTATTATATTATCATATTATATATTTATATTCT
TTTTTCCATCCCCTAATTTCTATTTTATTTTAATCTTATTTTATAATATT
AATAATTATAATATATCTATATCCTTCTTCCTTTTCTTTTTTCTTTTAAT
TTTATTTTATTCTTTATTATTTTGTAATACTTTTATTTTGTCTTTTTTAC
TACTACTACCATATATTTCTTACTATTTAATCTACTTTATACTCTATATC
TCTTTACTATATTAATTATTCATATTCTCTTCTAANCTATACTTTTGCTG
CTATCTACTTCTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_o14.g1 MSMg01no085_o14.g1 CHROMAT_FILE:
MSMg01no085_o14.g1 PHD_FILE: MSMg01no085_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:20 2005
         (272 letters)



>mm_chr4_9534799_9535470
          Length = 672

 Score =  497 bits (257), Expect = e-145
 Identities = 269/275 (97%), Gaps = 4/275 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcatcttcaacattctggatgtctaaaataattacaaatcataaat----aaataaat 56
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||| ||| 
Sbjct: 197 cttcatcttcaacattctggatgtctaaaataattacaaatcataaataaacaaacaaac 256

                                                                       
Query: 57  aaacaaacaaacaatgctgaagtgttaataggaaattccaacacttaaatatggcatgga 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaacaaacaaacaatgctgaagtgttaataggaaattccaacacttaaatatggcatgga 316

                                                                       
Query: 117 cacacatactgcaatgactacatttgtctgagaggctctgtattttcctgttcacatgct 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cacacatactgcaatgactacatttgtctgagaggctctgtattttcctgttcacatgct 376

                                                                       
Query: 177 attcactcccctacatcaggaaacgtaatacttaaaattcgccttatttgttcagtaggt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 attcactcccctacatcaggaaacgtaatacttaaaattcgccttatttgttcagtaggt 436

                                              
Query: 237 ttaaacattaagaaactttccaaaagacttttaaa 271
           |||||||||||||||||||||||||||||||||||
Sbjct: 437 ttaaacattaagaaactttccaaaagacttttaaa 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)