Query= MSMg01no086_i01.b1 MSMg01no086_i01.b1 CHROMAT_FILE:
MSMg01no086_i01.b1 PHD_FILE: MSMg01no086_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:16 2005
(589 letters)
>mm_chr4_103816163_103817151
Length = 989
Score = 652 bits (337), Expect = 0.0
Identities = 380/401 (94%), Gaps = 12/401 (2%)
Strand = Plus / Minus
Query: 5 gaattccaggcttgctcttatgactgtgtctatgagtgtgctcgtctaagaaatcacctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaattccaggcttgctcttatgactgtgtctatgagtgtgctcgtctaagaaatcacctc 339
Query: 65 cattgactgaacactcaattcaatatacttagaccaaggtctgaggaccacacgaggccc 124
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cattgactgaacgctcagttcaatatacttagaccaaggtctgaggaccacacgaggccc 279
Query: 125 atcacacctctgctaaattttaccttttaggttgactttcaaagttgctcatgcatcatg 184
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atcacatctctgctaaattttaccttttaggttgactttcaaagttgctcatgcatcatg 219
Query: 185 agattcataga---------gtttttgataagaacagtgagaagagaggaagatgagaca 235
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 218 agattcatagagttcaatacgtttttgataagaacagtgagaagagaggaagatgagac- 160
Query: 236 aaaaaaaaaagatttttgaggttatggtatgattcttgttccaggctaggaaactttcta 295
|||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 159 --aaaaaagagatttttgaggttatggtgtgattcttgttccaggctaggacactttcta 102
Query: 296 ccagggaaccaacagcccaagagttgcctagcattgacagagcacaatagctctccaaga 355
|||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 101 ccagggaaccaatagcccaagagttgcctaggattgagagagcacaatagctctccaaga 42
Query: 356 atggaatacaaacccaacaaaggaaagaatggatactgata 396
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 atggaatacaaacccaacaaaggaaagaatggatactgata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_i01.g1 MSMg01no086_i01.g1 CHROMAT_FILE:
MSMg01no086_i01.g1 PHD_FILE: MSMg01no086_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:16 2005
(606 letters)
>mm_chr4_103689386_103690391
Length = 1006
Score = 1149 bits (594), Expect = 0.0
Identities = 603/606 (99%)
Strand = Plus / Plus
Query: 1 actattaaacattctccccattcacgcgcactgatggatgaacctctgaaacaggaagtc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 actattaaacattctccccattcacacgcactgatggatgaacctctgaaacaggaagtc 260
Query: 61 ctcagagagatctatgggagtggaaacatatcagggaagatgatgccgttcatcactggt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccgagagatctatgggagtggaaacatatcagggaagatgatgccgttcatcactggt 320
Query: 121 tattacaggagtcaaagaaagataggaccgtttgctggactctgtttgaaagcccggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattacaggagtcaaagaaagataggaccgtttgctggactctgtttgaaagcccggtga 380
Query: 181 caaatgaagaggccagctatgtgttgtccagtgctccattcattttcacctcagctccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaatgaagaggccagctatgtgttgtccagtgctccattcattttcacctcagctccag 440
Query: 241 tcactggtgactgaacaggctttaacttagtgaaggtggggtgtacaggagagagcatcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcactggtgactgaacaggctttaacttagtgaaggtggggtgtacaggagagagcatcc 500
Query: 301 cattgtgagctgagtaagaccaatgagatcattgtatcaaatagaattttaaggcagaga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattgtgagctgagtaagaccaatgagatcattgtatcaaatagaattttaaggcagagg 560
Query: 361 ccaaacaaataaagaaggtggtacagttgagagtaaccaggcaaaggattctgattatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaacaaataaagaaggtggtacagttgagagtaaccaggcaaaggattctgattatga 620
Query: 421 gtctcccaaagcagacccatggtatgtgtatcatattggtgtgtccagcaagagaaacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctcccaaagcagacccatggtatgtgtatcatattggtgtgtccagcaagagaaacaa 680
Query: 481 gaacacatggcatcatgatcttttagtatcaccaagcagcttctggcaaagtctcaacct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaacacatggcatcatgatcttttagtatcaccaagcagcttctggcaaagtctcaacct 740
Query: 541 agacaagggtccagaactgttgactctgttgttcatgccccaatattattctataaacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agacaagggtccagaactgttgactctgttgttcatgccccaatattattctataaacat 800
Query: 601 tgcttg 606
||||||
Sbjct: 801 tgcttg 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
