BAC Information

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BAC

Clone NameMSMg01-086P07
Chromosome4 (Build37)
Map Location 6,845,449 - 6,845,979
singlet/doubletsinglet
Overlap geneTox
Upstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086P07.T7 (MSMg01no086_p07.b1)MSMg01-086P07.TJ (MSMg01no086_p07.g1)
ACCAG306124AG306125
length676680
length of high quality
(start - end)
536 (21 - 556)468 (55 - 522)
definitionCHROMAT_FILE: MSMg01no086_p07.b1 PHD_FILE: MSMg01no086_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:53 2005CHROMAT_FILE: MSMg01no086_p07.g1 PHD_FILE: MSMg01no086_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTCCTATTCAGAGAGGATCCGCGGAATTCCTACTGTGCCTTACTTTTT
AAAGTCCCCTCTCAATGCTGGGACCAAGTGTTTAATACCATTCTCCTACT
GTGGTAAGCTGGGACTGAGTGTTTAGTGTGGGTCTTTGGGAGACACCTAA
GACCCAAACTACAGTAGAGCCTAAGGGTGTTGTGAAAATGCCTGAGAGAA
TTCTAGCAAGCAGCAGGAACTGTGCTCAATGGCTGAATGGGCTGCACATG
GTGTTTCCACACGTCGGCTGTTCTCGGTCTCCAGTTTGAACAGCCGACCT
GTTCCATCCCATTGTTCTTATGAGTCCTAGTCACACTGCCATCATAGCTG
ATCACAAAAGAAATATTTCAGGCTATATCACAGTTTATATTCTCCAACAA
CAGGACCCCACAGTATCCACAGGCCATGGTTTTCACTAAACATTTTATTG
AGTAAATGAATAAAAGTCAAAGAAAGCAAGTGACTGTAGTCTCCGAGGGC
ATCGTATATCAGCCATGGAGTGCATAGCTCCTGTTTATTTGCTTAGGCAA
ATAAACAAAATAGGAATGGACCTAACCCAAGAATTGCCATTTTACTGAAG
TCACCATAATTCTTGTTAATTGATTGCTTCCAGTTGTACACATGTTCATG
CTGCTTATCAATGAACATCTGCTGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCATTCCATTGAGGAAGGAACTGATGAGCCCAACTTTATGAAACGTT
ACAAATAAAGAACCAGACAATAATGCAGAGAGTGAGAGACTTTGGAGCAC
TGCGTTCTAAATGGGGTGTCTTAATTAAAGCCTTCTTCTCAAGGCTCAGG
AATTTTTGTGAAAGAGGGCCTGGAAGGTTACAAGAGCCAGAGGTAATGGA
AGACTCCAAGGAAACAGTATCTTCCAGATACAACAGTGCCGCGATGTACA
CACAAACCCACGGAGACTGTGTTAGCATCCACACACATATACAGGTTCAA
GCCAAACGAGGTCTGAGCACCCCTGAGAAGGGAAAATAGTCACAAAGTTC
CATTCCTAACCAAGAGGCTAATGTAGCAATACCTGCTGCTGGCCAAGGGA
AAACAGGTGCTCCCTGCTCCCTGATGGAGTCTCCGAGGATGTGTCAATCA
CTCTCCAAGGCAAGCCCAGAGCCTACCAGTAGTCAGCCAACATAAAATGA
ATTTCATGGGTTCTTTTTCTACGCGGGAGATTTTTGCTTTGTTAATTTCT
CCCTTAGGCATATTTTTTTTCTTTTTCTTTTTCCTTACTGTTTTTGTGCC
TGTTTGTTCGTCTGTCTCTGTGTGGTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_p07.b1 MSMg01no086_p07.b1 CHROMAT_FILE:
MSMg01no086_p07.b1 PHD_FILE: MSMg01no086_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:53 2005
         (536 letters)



>mm_chr4_6845244_6846179
          Length = 936

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%), Gaps = 2/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcctactgtgccttactttttaaagtcccctctcaatgctgggaccaagtgtttaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gaattcctactgtgccttactttttaaagtcccctctcaatgctgggaccaagtgtttaa 677

                                                                       
Query: 66  taccattctcctactgtggtaagctgggactgagtgtttagtgtgggtctttgggagaca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 taccattctcctactgtggtaagctgggactgagtgtttagtgtgggtctttgggagaca 617

                                                                       
Query: 126 cctaagacccaaactacagtagagcctaagggtgttgtgaaaatgcctgagagaattcta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cctaagacccaaactacagtagagcctaagggtgttgtgaaaatgcctgagagaattcta 557

                                                                       
Query: 186 gcaagcagcaggaactgtgctcaatggctgaatgggctgcacatggtgtttccacacgtc 245
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 556 gcaagcagcaggaactgtgctcaatggctgaatgggctgcacatggtgtttccacatgtc 497

                                                                       
Query: 246 ggctgttctcggtctccagtttgaacagccgacctgttccatcccattgttcttatgagt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggctgttctcggtctccagtttgaacagccgacctgttccatcccattgttcttatgagt 437

                                                                       
Query: 306 cctagtcacactgccatcatagctgatcacaaaagaaatatttcaggctatatcacagtt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctagtcacactgccatcatagctgatcacaaaagaaatatttcaggctatatcacagtt 377

                                                                       
Query: 366 tatattctccaacaacaggaccccacagtatccacaggccatggttttcactaaacattt 425
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 376 tatattctccaacaacaggaccccacaatatccacaggccatggttttcactaaacattt 317

                                                                       
Query: 426 tattgagtaaatgaataaaagtcaaagaaagcaagtgactgtagtctccgagggcatcgt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tattgagtaaatgaataaaagtcaaagaaagcaagtgactgtagtctccgagggcatcgt 257

                                                               
Query: 486 atatcagc-catggagtgcatagctcctgtttatttgcttaggcaaataaac 536
           |||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atatca-ctcatggagtgcatagctcctgtttatttgcttaggcaaataaac 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)