BAC Information

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BAC

Clone NameMSMg01-086P15
Chromosome4 (Build37)
Map Location 27,356,113 - 27,356,261
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086P15.T7 (MSMg01no086_p15.b1)MSMg01-086P15.TJ (MSMg01no086_p15.g1)
ACCAG306138AG306139
length776906
length of high quality
(start - end)
149 (189 - 337)---
definitionCHROMAT_FILE: MSMg01no086_p15.b1 PHD_FILE: MSMg01no086_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:55 2005CHROMAT_FILE: MSMg01no086_p15.g1 PHD_FILE: MSMg01no086_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTTCCTCTTNCCCCTCTCCTTTCCTCTCCCTNNCCNCCTAATATC
CCACAATCTATAATTGCGGCGCTATACGACTCCTATTTCCAGAAATCCGC
GGAATTCTGAGGCTCCTCAAAAAAAATGTAACAATAAATTGCTGAATATA
TTCAGTTTCTTTCAGTCGTATACCCCGAAAGAGAGAGGGCTTTCTCCTTA
ATGTATGCAAAAGGAAAAATAACACCATGATAGTTATCACTAGCGATAGG
TCCACAATATGCTGAAACGTCCACACCTAATCTTCATTTGTAGTCTACTG
ACCATTATATTATTAACAGGTATGTCAAAATTGAGTGCTGAGCATAAAAT
AGATTTTTCATTTTATTTGCATTCTGAAGCTTGTACATAGTTCATTATAT
GGAAAATAACTTTTTTTATTGTAATTACCTGCACCCGTATTTCAGAGGCT
GTATGTTATCTAAAGCATGCATACTGTTAATACTGATGTGGCCATTCATT
TTTATTACTTAAAACAACATCTTTCGCTGATTTCTCTGTTTTGCCCCGCT
TTTGCCTAATCGGATGATGTCTCCCCATAGTTCGGCATGCTATACGTCCT
ATTTGCGTCAGCCCATATGATATCCCTGCCTTGTAATTAAAACCGTAACT
TTTTTGCATACCCAAGCACATTGTATCATTGTGCCTTATATGCCACTTTT
CCCCTTTCAAACTTCCCCTAATTACATTTTAATAAATTTTTACCCGTAAT
CCGTTTATATACACCTTACTCCCCCC
TTTTTTTTTTTNTTTTTNNNTTCTTTTTTTCTTTTTCCCTTTTNNGGGGA
TAAANCTAGTGGAGATATGGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGAGGGAGAGATCTA
GTCGTGTGTTGTTGTTGTTGGGGGGTGTGTGGCTGAAAAAGAGGAGGGGN
GATTGTTTTTATTTTTATGAGGATTGGGGTATTGTTTAGAAGGATCGTAG
GAATGAGTTTACAACTTTGCGCGCTGGTAGCTTTCGATGGAAATCATCTA
TTTTATCTAGTTTCTTCAAGTTTCGGGTGAGTACAGGGTTATTTGATGCT
GTGATATGAGGAAGTATTTTGATCGCATATGAGAGATATATTTATTTTTT
TTGGACTTGTTATATTTATTTCTTACCCAGCATCTTGTTTTTTTTTTCAA
CCCCGCCCCCATCCGTGTTGTTGCTTTTTGCGCGTATTTGGGTTTATCCT
GTGTTTTGTCTTAAAAAAAAAATAAAAATAGGTTGGGTGGGGGGGGGTGA
TTTCCTTTTTGGGGGTGGGGGAGAGGATGGAGAAGGGTTAAGGTGTATAA
TTACGATGATATCGATTCTTCCACGTCTTATTTATACCTTTTTCGGTTTG
TGTCCGTGGGTCCTGCTGTTTTCGTCGGGCTTTGTCGGCGTTTTACGCAC
TTTTGTCCTTTTCTGCGTACTTATTGCGCCGGTTCGAGGTCTGCGCCGGT
TGATAATAGATCGCTTGTGGGGATTGGTGGTAACACGAATAGTATGCGTA
TTTCGCATGATTATGAGCATGAGTATGAGAGATACTTTTTACGATAGCTG
AGATATGTTGAGTAGCATTGTTTCGTTCGTATCATCAGTGTTTCTATACG
ATTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_p15.b1 MSMg01no086_p15.b1 CHROMAT_FILE:
MSMg01no086_p15.b1 PHD_FILE: MSMg01no086_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:55 2005
         (149 letters)



>mm_chr4_27355913_27356461
          Length = 549

 Score =  259 bits (134), Expect = 5e-74
 Identities = 146/150 (97%), Gaps = 2/150 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctttctccttaatgtatgcaaaaggaaaaataacaccatgatagttatcactagcgata 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 349 gctttctccttaatgtatgcaaaaggaaaaataacaccttgatagttatcactagcgata 290

                                                                       
Query: 61  ggtccacaatatgctgaaacgtccacacctaatcttcatttg-tagtctactgaccatta 119
           |||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 289 ggtccacaatgtgctgaaacgtccacacctaatcttcatttgat-gtctactgaccatta 231

                                         
Query: 120 tattattaacaggtatgtcaaaattgagtg 149
           ||||||||||||||||||||||||||||||
Sbjct: 230 tattattaacaggtatgtcaaaattgagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)