BAC Information

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BAC

Clone NameMSMg01-087B03
Chromosome4 (Build37)
Map Location 92,775,702 - 92,776,264
singlet/doubletsinglet
Overlap geneLOC620269
Upstream gene1700011H22Rik, LOC68280
Downstream geneLOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B03.T7 (MSMg01no087_b03.b1)MSMg01-087B03.TJ (MSMg01no087_b03.g1)
ACCAG306205AG306206
length679696
length of high quality
(start - end)
570 (52 - 621)368 (82 - 449)
definitionCHROMAT_FILE: MSMg01no087_b03.b1 PHD_FILE: MSMg01no087_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:03 2005CHROMAT_FILE: MSMg01no087_b03.g1 PHD_FILE: MSMg01no087_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:03 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCGGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTATTAAGCTTTGTACTTCATTTTTAATAAGGTTATTT
GGTTCTCTGGAGTCTAACTTTTTGAGTTCTTTGTATATATCGGATTGGTA
AAGACCTTTTCCCAATCTGTTGGTTTGTTATATTGACAATGTCTTTTCCC
TTACAGAAGATTTTCAATTATATGAGGTACCATTTGTCTATTGTTGATCT
TAAAGCATAAGCCATTGGTGTTCTGTTCAGGAAAATTTCGCCTGTGCCCA
TGTGTTCTAGGCTCTTCCCCACTTTCTCAACTCTTCTGCTGATGCCCCAA
GTTTGTAATGGGTGTTAACCACAAGACATATGGAAACTTGTTCAAGATTA
TCAGCAATGCTTCTTACATGAACTGCTTAGGCCCCCTGACCAAGGTAGTC
CATGACAACTTTGGCATTGTGGAAGAACTCATGACCATAGTCCATTCCAT
TACTACCATTCAGAAGAGTGCTCATGGCCCCTCTGAAAAGGTGTGGCGTG
ATGGCTTTAGGGCTGCCCAGAACATCATCCCTGGATCCACTGGTGCTGCC
AAGGCTGTATGCAAGGTCCATCTCAGAGCTGAACATGAAGCTCACTGGAT
TGGCCTCTGTATTCCTACCACCAATGTTT
CCCCNCCACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCTGAATGAGAGTGGTG
ACCCGTCTTCAAAGTCCACCAAAATCACATGGAAATCTGGAAAGGATTTG
ACAAAACGCTCAAGCCTCACACAGAATAAGGCCAGCAGGAAGAGGCAGCA
TGAAGAGCCTGAGAGCTTCTTTACCTGGTTTACTGAGCATTCTGATGCAG
TTGCTGACAAGTTAGGAGAGGTCATCAAATGTGACATTTGGCCAAATCCC
TTGCAGTACTATTTGGTTCCCGACATGGATGATGAAGAAGGAGAGGCAGA
AAATGATGATGACGACGACGAAGAGGAGGAGGGGTTGGAAGATACTGATG
AAGAAGGAGATGAGGATGAAGGTGAAGAAGATGATGAGGAGGATGAGCGG
GGCATGATGATTGTCCCCCTTTCTTCTTTTTTCCCATTGCTCCTCCCCCC
TTTTCTTTTGTGGCCCCCCTTTCTCCTCGTATACCGACCCGCCTTCCTTT
GCTCCTTCCCCCCCCCCTCTCTATTACCCCCCCATTACTCTCCCCCCCTT
CATTCTGCCCCCCCCTCCCCTTTCGTTCCCCCTCCTTCCCTTCTTACATC
AATTCCCTCTTCCCGCCCTATTTATTTTCCCCCTTCTTCACCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b03.b1 MSMg01no087_b03.b1 CHROMAT_FILE:
MSMg01no087_b03.b1 PHD_FILE: MSMg01no087_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:03 2005
         (570 letters)



>mm_chr4_92775498_92776467
          Length = 970

 Score = 1042 bits (539), Expect = 0.0
 Identities = 557/563 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttattaagctttgtacttcatttttaataaggttatttggttctctggagtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttattaagctttgtacttcatttttaataaggttatttggttctctggagtct 264

                                                                       
Query: 65  aactttttgagttctttgtatatatcggattggtaaagaccttttcccaatctgttggtt 124
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 265 aactttttgagttctttgtatatatcagattgataaagaccttttcccaatctgttggtt 324

                                                                       
Query: 125 tgttatattgacaatgtcttttcccttacagaagattttcaattatatgaggtaccattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttatattgacaatgtcttttcccttacagaagattttcaattatatgaggtaccattt 384

                                                                       
Query: 185 gtctattgttgatcttaaagcataagccattggtgttctgttcaggaaaatttcgcctgt 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 gtctattgttgatcttaaagcataagccattggtgttttgttcaggaaaatttcgcctgt 444

                                                                       
Query: 245 gcccatgtgttctaggctcttccccactttctcaactcttctgctgatgccccaagtttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcccatgtgttctaggctcttccccactttctcaactcttctgctgatgccccaagtttg 504

                                                                       
Query: 305 taatgggtgttaaccacaagacatatggaaacttgttcaagattatcagcaatgcttctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taatgggtgttaaccacaagacatatggaaacttgttcaagattatcagcaatgcttctt 564

                                                                       
Query: 365 acatgaactgcttaggccccctgaccaaggtagtccatgacaactttggcattgtggaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatgaactgcttaggccccctgaccaaggtagtccatgacaactttggcattgtggaag 624

                                                                       
Query: 425 aactcatgaccatagtccattccattactaccattcagaagagtgctcatggcccctctg 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 aactcatgaccatagtccattccattactaccattcagaagagtgctcatggtccctctg 684

                                                                       
Query: 485 aaaaggtgtggcgtgatggctttagggctgcccagaacatcatccctggatccactggtg 544
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaaggtgtggtgtgatggctttagggctgcccagaacatcatccctggatccactggtg 744

                                  
Query: 545 ctgccaaggctgtatgcaaggtc 567
           |||||||||||||| ||||||||
Sbjct: 745 ctgccaaggctgtaggcaaggtc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)