ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTACAGATTGCTCAGTGGAGAGTGACTGAAGAAAGAAAGGGGGG
AACTGGAGAGATGGCTCAGTAGGCAATGAGCTTGCAGTGCAAGCAAGAAA
ACATGAGATAAGTTCACTGAGCACCTATGTAAAATAATTGAAGCATCGCA
CTTTAGTATTGGCAAGGTAGTAATAGGATGAACATAGAAGCATGGTGGTC
AGAGATATAGCCAAATCAGCAATCTCTGTGTTTATTGAGAAACTGTCTCA
AAAATAACAAAAAGGTGAGAACAATCTATGAAAATATCCATTATTGACCT
TTAGCCACTTCATAGATATATAAAACATAGAACATTTGCATACATATGCA
TAAATCACACAGAAACGTGTATCAAAGTATGAGAATACTTTTGATATCAA
TGGGAGGAGGTGTAGATGCACACAAATGAATATTCCTTAATTTTTACTAA
GTAGAATTTTTAAAATTGAATAAAAGGGCAAAGTCAATGAGTAGTGTGCT
CAGCTATAAATGAGATATCTAAATCACAATGTCTGAGACTCAGGGACCAT
CACAGAAGAGGCAGAGAAAATTGATAATAGCCTTAGGAATGAGGGCTGAG
AAGAAAATACAATCTAGAGGTGGTTGTTTATCAACTTTCTGCAGCTATGG
ATATA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATGCCTAAACATGAAAAAAG
CAATAAAAAACAAACCAATATCTAAAATCAAAGTAAATGGTAAGAAGCTA
GAAGCAATCCCACTAAAATCAGGCACTAGACAAGCCTGCCTACTTTCTCC
CTACCTATTCAACATTGTATTTGAAGTCCTAGCCACAGCAATTCAACAAC
AAAAGTAGATCAAGGGGATAGAAATTGGAAAGGAAGAAGTCAAAATATCA
CTTTTTGCAGATGATATGATAGTATGTATAAGTAACCCTAAAAATTCCAC
CAGAGAACTCCTAAACCTAATAAACAGCTTTAATGAAATAGCTGGATATA
AAATTAACTCAAAAATGTCAATGGCCTTTCTCTACACAAAGGATTGACAT
TCTGAGAAAGAAATTAGGGAAACAACACTTATCTTAATAGTCACAAATAA
TATAAAATAGCTTGGCATGACTCTAACTAAGGAAGTGAAAGATCTGTATG
ATCAGAACTTCAAGTCTCTGAAGAAAGAAATCAAAGAAGATCTCAGAAGA
TGGAAAGATCTCCCATGCTCATGGATGGGCAGGATCAATATATTAAAAAT
GGCTATCTTGCCCAAAGCAATCTACAGATTTAATGCAATTGCCATCAAAA
TGCT

Query= MSMg01no087_o04.b1 MSMg01no087_o04.b1 CHROMAT_FILE:
MSMg01no087_o04.b1 PHD_FILE: MSMg01no087_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:10 2005
         (569 letters)



>mm_chr4_67176201_67177169
          Length = 969

 Score =  878 bits (454), Expect = 0.0
 Identities = 535/562 (95%), Gaps = 1/562 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctacagattgctcagtggagagtgactgaagaaagaaaggggggaactggagagatggc 68
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 208 tctacagattgatcagtggagagtgactgaagaaagaaaggggggaactggagagatagc 267

                                                                       
Query: 69  tcagtaggcaatgagcttgcagtgcaagcaagaaaacatgagataagttcactgagcacc 128
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 268 tcagtagacaatgagcttgcagtgcaagcaagaaaacatgagataagttccctgagcacc 327

                                                                       
Query: 129 tatgtaaaataattgaagcatcgcactttagtattggcaaggtagtaataggatgaacat 188
           |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 328 tatgtaaaataattgaagcatcacactttagtattggcaaggtagtaacaggatgaacat 387

                                                                       
Query: 189 agaagcatggtggtcagagatatagccaaatcagcaatctctgtgtttattgagaaactg 248
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agaaccctggtggtcagagatatagccaaatcagcaatctctgtgtttattgagaaactg 447

                                                                       
Query: 249 tctcaaaaataacaaaaaggtga-gaacaatctatgaaaatatccattattgacctttag 307
           ||||||||||||||||||||||  |||||||| ||||| |||||||||||||||||||||
Sbjct: 448 tctcaaaaataacaaaaaggtggcgaacaatcaatgaagatatccattattgacctttag 507

                                                                       
Query: 308 ccacttcatagatatataaaacatagaacatttgcatacatatgcataaatcacacagaa 367
           || || ||||||| |||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 508 ccgctacatagatgtataaaacatagaacatttgcacacatatgcataaatcacacagac 567

                                                                       
Query: 368 acgtgtatcaaagtatgagaatacttttgatatcaatgggaggaggtgtagatgcacaca 427
           ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 568 acgtgcatcaaagtatgagaatacttttgatatcaatgggtggaggtgtagatgtacaca 627

                                                                       
Query: 428 aatgaatattccttaatttttactaagtagaatttttaaaattgaataaaagggcaaagt 487
           ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 628 aatgaatatgccttaatttttactaagtagaattttaaaaattgaataaaagggcaaagt 687

                                                                       
Query: 488 caatgagtagtgtgctcagctataaatgagatatctaaatcacaatgtctgagactcagg 547
           ||| ||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||
Sbjct: 688 caaagagtagtgtgctcagctataagtgaaatatctaaatcacaatgtccaagactcagg 747

                                 
Query: 548 gaccatcacagaagaggcagag 569
           ||||||||||||||||||||||
Sbjct: 748 gaccatcacagaagaggcagag 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)