Query= MSMg01no088_b05.b1 MSMg01no088_b05.b1 CHROMAT_FILE:
MSMg01no088_b05.b1 PHD_FILE: MSMg01no088_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:25 2005
(653 letters)
>mm_chr4_14897508_14898560
Length = 1053
Score = 638 bits (330), Expect = 0.0
Identities = 367/380 (96%), Gaps = 4/380 (1%)
Strand = Plus / Minus
Query: 6 ggaattctgtttg-acctttc-attaaaaaaaaaaaaaggcaacaagtgattgtacctaa 63
||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 380 ggaattctgtttgaatctttcaatt--aaaaaaaaaaaggcaacaagtgattgtacctaa 323
Query: 64 gtgcaggggagggtgatactgaaagtctcagagtctgcctggaaaacaaggaatgagcac 123
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtgcaggggaaggtgttactgaaagtctcagagtctgcctggaaaacaaggaatgagcac 263
Query: 124 tgagggtcgaccatctaatctgcatgggcacctcacttagaacaacatatgcagacctgt 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 262 tgagggtcgaccatctaatctgcatgggcacctcatttagaacaacatatgcagacctgt 203
Query: 184 gagcgcccgactcgccagcaagaacgacggcacaataggatccttctgcacatgtttatt 243
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 202 gagcgcccgactcgccagcaagaacgacgccacaataggatccttctgcacacgtttatt 143
Query: 244 gggagagcattgactgcataggcaaaagaccctgagcccagaaatgatgctgcttatata 303
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 142 gggagagcattgactgcataggcgaaagaccctgagcccagaaatggtgctgcttatata 83
Query: 304 ggcctaggagtgacgtgtccatacctgattggttatgctaccagtacctcattaatatgc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 82 ggcctaggagtgacgtgtccatacctgattggttatgctaccagtacctcattaacatgc 23
Query: 364 atcgggccaggcagtgactc 383
||||||||||||||||||||
Sbjct: 22 atcgggccaggcagtgactc 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_b05.g1 MSMg01no088_b05.g1 CHROMAT_FILE:
MSMg01no088_b05.g1 PHD_FILE: MSMg01no088_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:25 2005
(576 letters)
>mm_chr4_14801375_14802349
Length = 975
Score = 1027 bits (531), Expect = 0.0
Identities = 565/577 (97%), Gaps = 3/577 (0%)
Strand = Plus / Plus
Query: 1 ccatccatccatccatgcttgtgcttggagatagggtctccctgaggctagcttgggact 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ccatccatccatccatgcttgtgcttggagatagggtctcactgaggctagcttgggact 260
Query: 61 tgtgatttccctgcctctgcctccacacctgtctcaggaggtatcaagcatagagcactg 120
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 261 tgtgatttccctgcctctgcctccacgcctgtctcaggaggtatcaagcacagagcactg 320
Query: 121 gcagttgctaatggtaattggc-gatggacaggggtgtggccgaagagacctagcatggg 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagttgctaatggtaattggccgatggacaggggtgtggccgaagagacctagcatggg 380
Query: 180 cattgctctatgagaataaacataagatatgtgcaaggtcttccactttcccaagacttc 239
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cattgctctatgagaataagcataagatatgtgcaaggtcttgcactttcccaagacttc 440
Query: 240 aggtgagacttccaagcatcatggaccgcagtctctttatagcctcagagccattcttaa 299
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 441 aggtgagacttccaagcatcatggagcgcagtccctttatagcctcagagccattcttaa 500
Query: 300 ttgctgtcaggcgctacctgttccagtatagagcctcggtttctcacaccagaaacaagc 359
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctgtcaggcgctacctgttccagtttagagcctcggtttctcacaccagaaacaagc 560
Query: 360 agtatgcagtatgctttggcgtttatgccatatgttttgtggcccagttgttttttgtaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 agtatgcagtatgctttggcgtttatgccatatgttttgtggcccagttgtttt--gtaa 618
Query: 420 gggatttgaagcacctgagctatgtcttcacagaatatccttcattcaaagtgcttggga 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 gggatttgaagcacctgagctatatcttcacagaatatccttcattcaaagtgcttggga 678
Query: 480 tgggaagtggtttaattaattagttaattaattagaaatttacataggcttcacaggact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgggaagtggtttaattaattagttaattaattagaaatttacataggcttcacaggact 738
Query: 540 gaacattcctaatctgaaaaggtgaaatctgaaatac 576
|||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaacattcctaatctgaaaaggtgaaatctgaaatac 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 975
Length adjustment: 10
Effective length of query: 566
Effective length of database: 965
Effective search space: 546190
Effective search space used: 546190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
