BAC Information

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BAC

Clone NameMSMg01-088F05
Chromosome4 (Build37)
Map Location 97,070,316 - 97,070,616
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088F05.T7 (MSMg01no088_f05.b1)MSMg01-088F05.TJ (MSMg01no088_f05.g1)
ACCAG307114AG307115
length706693
length of high quality
(start - end)
535 (43 - 577)576 (56 - 631)
definitionCHROMAT_FILE: MSMg01no088_f05.b1 PHD_FILE: MSMg01no088_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:45 2005CHROMAT_FILE: MSMg01no088_f05.g1 PHD_FILE: MSMg01no088_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:45 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCT
GAAGTCCACCTTCTTGACTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTC
TTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTA
CTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTG
TAGTAAAGCTTTAAGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTTAT
CCTTGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTCCTAGAGACTATGGAAATCTTGATAAAAGTAGTTTCTTTCAG
CTACTAAAGTTTGGTAATATCAAACTAAGACTAATATCAATCTCTTTACA
AACTGTGTTTTCTGAGACATACAAATATTGGGTATTAATCATAAGCATTT
AGACAAAAAAAGAGCATAAAGCAATCCCACTTCATAGTTGAATAAGTCTA
GACTCGGAGTTAGAATATCAACTCATTTTCTACAGATAAAGTGATTGTTT
GTTTAATAATAACTAAGAAGGTCAAATGCAGCCCAGTATTGCTCCCTACA
GAAAAACCCTGTAAAATCTTCAATGCTGCTTTTGCAAACTGCTCTCATCC
TTAAGAATATTGCTCAAATGATGTTACCCTAAATACAGCTTTTTAAAAAA
TTAAGAAACATACTATGTGAGTATGTTTTTATCACAAGTCCTACAGCATA
GTATATGTGTAATAAATATTTAAGTCTATTTGCAGATTATTAAAATCAAA
CAAGTAAAATTATTGTATATTTGTCTTTACAAGCTCATTTCCAGATTATT
GCATTCAACAACATATTTGAATATAAGTAGTCTTGCTTTATCTTCTTATC
TGGCTAAACAAGGAGAAAAAAAAGCAATGTTCCTTCATCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_f05.g1 MSMg01no088_f05.g1 CHROMAT_FILE:
MSMg01no088_f05.g1 PHD_FILE: MSMg01no088_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:45 2005
         (576 letters)



>mm_chr4_97070116_97071085
          Length = 970

 Score =  485 bits (251), Expect = e-141
 Identities = 293/311 (94%), Gaps = 14/311 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctagagactatggaaatcttgataaaagtagtttctttcagctactaaagtttggt 60
           |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 201 tttcctagagactatggaaatcttgataaaagtaatttctttcagttactaaagtttggt 260

                                                                       
Query: 61  aatatcaaactaagactaatatcaatctctttacaaactgtgttttctgagacatacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatcaaactaagactaatatcaatctctttacaaactgtgttttctgagacatacaaa 320

                                                                       
Query: 121 tattgggtattaatcataagcatttagacaaaaaaagagcataaagcaatcccacttcat 180
           ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 321 tattgggtattaatcataagcatttagacaaaaaa-gagtataaagcaatcccacttcat 379

                                                                       
Query: 181 agttgaataagtctagactcggagttagaatatcaactcattttctacagataaagtgat 240
           |||||| ||||||||||||| ||||   ||||||||||||||||||||||||||| ||||
Sbjct: 380 agttga-taagtctagactcagagt---aatatcaactcattttctacagataaa-tgat 434

                                                                       
Query: 241 tgtttgttt---aataa-taactaagaaggtcaaatgcagcccagtattgctccctacag 296
           |||||   |   || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tgttt---tgccaa-aagtaactaagaaggtcaaatgcagcccagtattgctccctacag 490

                      
Query: 297 aaaaaccctgt 307
           |||||||||||
Sbjct: 491 aaaaaccctgt 501



 Score =  209 bits (108), Expect = 5e-58
 Identities = 120/124 (96%), Gaps = 2/124 (1%)
 Strand = Plus / Plus

                                                                       
Query: 301 accctgtaaaatcttcaatgctgcttttgcaaactgctctcatccttaagaatattgctc 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 849 accctgtaaaatcttcaatgctgcttttggaaactgctctcatccttaagaatattgctc 908

                                                                       
Query: 361 aaatgatgttaccctaaatacagctttttaaaaaattaagaaacatactatgtgagtatg 420
           |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 909 aaatgatgctacc-taaatacagctttt-aaaaaattaagaaacatactatgtgagtatg 966

               
Query: 421 tttt 424
           ||||
Sbjct: 967 tttt 970


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 576
Length of database: 970
Length adjustment: 10
Effective length of query: 566
Effective length of database: 960
Effective search space:   543360
Effective search space used:   543360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)