BAC Information

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BAC

Clone NameMSMg01-088F11
Chromosome4 (Build37)
Map Location 11,627,277 - 11,705,761
singlet/doubletdoublet
Overlap geneLOC100039862, Gem, Cdh17
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik
Downstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088F11.T7 (MSMg01no088_f11.b1)MSMg01-088F11.TJ (MSMg01no088_f11.g1)
ACCAG307126AG307127
length698692
length of high quality
(start - end)
233 (111 - 343)224 (112 - 335)
definitionCHROMAT_FILE: MSMg01no088_f11.b1 PHD_FILE: MSMg01no088_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:46 2005CHROMAT_FILE: MSMg01no088_f11.g1 PHD_FILE: MSMg01no088_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,705,529 - 11,705,761)(11,627,277 - 11,627,500)
sequence
GCGGCCGCTATACGACTCCTATACGGAGAGGATCCGCGGAATTCTTAAAG
TACAGAAATGATCAATATTGATCCTTTAAGCTTCATTATAAAGGGCAAAA
GACTTTTACCATAAAGTAACAAAAGTACACACAAGTAAAGCCAGGCCATG
GTTGCCTCTGAAGCAGAAGTGCGCATGTCAGCAGTGTGTACAAACGAGGT
AAGAACAGCATGGCTAGACAGGGCTTTACAAATCCTCTTGTCAATATTAC
GGCTATTAATAAACAGTGCCACTGTTAGTGTTTTAAGACGAGTATGACGT
CAATGTTATAGATGGAGTGAGACCCTGCTATTCCTCCAGTAAAGCTTGAT
TATGTTGGCAGATAGTGGCAAACACCAATTTATCAACTTTGTCAGAGCAT
CACAACTGACCAAAACCCTCCTGGATGTCAATAAGCACCAACCTGTGCTG
TTTTAAGTTGCCTTACCCCACTGACCTTCCAGCTCAGTGTGAAAGAGGAT
AGAAGGTACAGGACAGACTCGCCAGCACAGTGTGGCAGTGGGCAGAGAAG
ACAGTAACTCCCAAAGCCATTGCCAGAGAACCGTCATTGTGTAACCTGCT
GGAGTCTATTTAATCTGAGTCAGTTCTTATCACTATTAATGTCCACGGAC
TTCTATTGAATAGACCCATGTAAAACTGGTGGGCATAGTACTTCACTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTACTGGATTAATTTAACTGGAGCCCGAAGAGGCAGCAAAGTTGAG
CCCAGGAGGCTGAACTCCAGTCCTTGGCTCCTGCGTCATTGTCACAGTCA
TTGCTGTGCTGATGGCCTGGTCTGTAGTTCATAAGCACTTCCACAGGCAG
TTTGCAGAACAGCAGAAGCCCTGGCCTCTGAGGCTCCGAGTCACAGGCGA
GGAGGAGGCAAGGTCTAGGTTTGATCTTGCTTTTCTGATGTGAAATCCCC
TACCTTTCCTTTCAGCCTATGCAGGGATCACACATGTTTTTTTGAGCCCC
CCCCTCCACATAAAAGGGAAGAGCTGGCCGTATCCAAATGTGTTCACAAT
ATAAAAAAATGTCGGGAAGTGAGGGCGTACCTTGCCTACATTGCTAAATT
GCATACCTTGCTACAGTTTGCATATTGAAAAATTTCTCCTCTTCACTCTG
AATGACCTTGTGGTTGAAGTTCCAGTGATTGATTGTGCATATGGTAGTTT
TCTAGGAGACTCCAAGTTCTATGCTGTTATATTTGTTCCTGATCTTTAGA
ATTCGAAGTCTGACGAGATCAGTTCTCACCATTTTGGTTTTTTTTTTTAC
ACGCAACCCATATTTTCTTATCCATTATTCTTCCTCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_f11.b1 MSMg01no088_f11.b1 CHROMAT_FILE:
MSMg01no088_f11.b1 PHD_FILE: MSMg01no088_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:46 2005
         (233 letters)



>mm_chr4_11705329_11705961
          Length = 633

 Score =  404 bits (209), Expect = e-117
 Identities = 227/233 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaagtaacaaaagtacacacaagtaaagccaggccatggttgcctctgaagcagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ataaagtaacaaaagtacacacaagtaaagccaggccatggttgcctctgaagcagaagt 374

                                                                       
Query: 61  gcgcatgtcagcagtgtgtacaaacgaggtaagaacagcatggctagacagggctttaca 120
           ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 373 gcgcatgtcagcagtgtgtacaaacaaggtgagaacagcatggctagacagggctttaca 314

                                                                       
Query: 121 aatcctcttgtcaatattacggctattaataaacagtgccactgttagtgttttaagacg 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aatcctcttgtcgatattacggctattaataaacagtgccactgttagtgttttaagacg 254

                                                                
Query: 181 agtatgacgtcaatgttatagatggagtgagaccctgctattcctccagtaaa 233
           |||||||||||||||  | ||||||||||||||||||||||||||||||||||
Sbjct: 253 agtatgacgtcaatgggagagatggagtgagaccctgctattcctccagtaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no088_f11.g1 MSMg01no088_f11.g1 CHROMAT_FILE:
MSMg01no088_f11.g1 PHD_FILE: MSMg01no088_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:46 2005
         (224 letters)



>mm_chr4_11627077_11627700
          Length = 624

 Score =  433 bits (224), Expect = e-126
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaactccagtccttggctcctgcgtcattgtcacagtcattgctgtgctgatggcctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaactccagtccttggctcctgcgtcattgtcacagtcattgctgtgctgatggcctggt 260

                                                                       
Query: 61  ctgtagttcataagcacttccacaggcagtttgcagaacagcagaagccctggcctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtagttcataagcacttccacaggcagtttgcagaacagcagaagccctggcctctga 320

                                                                       
Query: 121 ggctccgagtcacaggcgaggaggaggcaaggtctaggtttgatcttgcttttctgatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctccgagtcacaggcgaggaggaggcaaggtctaggtttgatcttgcttttctgatgt 380

                                                       
Query: 181 gaaatcccctacctttcctttcagcctatgcagggatcacacat 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatcccctacctttcctttcagcctatgcagggatcacacat 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)