BAC Information

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BAC

Clone NameMSMg01-088K14
Chromosome4 (Build37)
Map Location 85,880,661 - 85,880,971
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3gl2, A930009N24, LOC668052
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088K14.T7 (MSMg01no088_k14.b1)MSMg01-088K14.TJ (MSMg01no088_k14.g1)
ACCAG307359AG307360
length1,177754
length of high quality
(start - end)
---461 (137 - 597)
definitionCHROMAT_FILE: MSMg01no088_k14.b1 PHD_FILE: MSMg01no088_k14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:13 2005CHROMAT_FILE: MSMg01no088_k14.g1 PHD_FILE: MSMg01no088_k14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACGATAAACTTATATATCGGCGACCGCGCATGTCTGNCAGACATAATC
CTCTANCTCTACTAACCATTATCCGTCTCTCTCCATCTCTTCCTCTCCAA
GACTTCGCTGGGCCGCGTAACTACGAATTTCTCTATTTTCCCTATGAGAG
AGGTCGTCGCGGAATCTCTCTTGTATTTTCCACCATATATTGCACTCCTT
CACTCCTCATGCGTTGTCTNTATTGCACGTATGTGTTTCCTCATGGACCG
CGCAACCGCTTCCCGCTTGTACACGAGTTATACTGCTGCCGACCTATCTC
TTCTGTCCTGGCGTCGCACCTGCGCAGCACAATATCACCTCCCGCCTTTC
ACCACTCTCTACACCTGGAGAGAACTCGCGCGCGCTCCGCGGTATTACAT
AGTCGATTCACACACCTAGACTTATACCCATCATATAGATACNCATTACG
TACGCCGTACTTCCTATACATCTATGCACCCTCTTATGCGTTCGCTGCTC
GTCTTATTATCATCCTGTATATGTGTGCCTCACACCACATTTAGTACAAA
GATGCGAGCTGCGTCTTATGCCGCGGAGCCGTNCGATATGCATTAGCGTT
GTCGCTGCTAGATGTATATACGACGCATTAGATATATAATGTTCTCGAAG
TGGTGTGACCATGAATGTGTGAGGCCGCGTTAATCGTTCGGTCTACTACT
ATCGCGCCTATCTTCCTTTCTAGCCATATTTATCACAGTACACTTTCACG
ACTAATTATGTCTCGAAACAGTAGCATGCTCGCGTACGAAGCGCTTACGT
TCTACGATTACTGCCAGTTACCGATTAGCGCGCCGTTGATAAAGTGGGAG
ATAGTATAAGATATTAACGACATCTTATCCGCACTTATGTTATGCGTATA
TGTCTCTCCTTTACTCGTTGTCCGCTGTGTCCATGTCCAACGCACTCGGA
CTTATTATACGGCCGACTCCCCGCTCTCGCCAACAGTATATTTCTCTCTA
TGTCGANTATATTCGCCATATGCTGTGTTTGTACATAGATATACTAGTAA
TTTATGCCGATGGCCAGTTCGGTACCCGTTTTTGTGGTAACTTACCATTA
CCCTACGCGATCTTGATTATTAATCTTTACTCCCCAGCGCTNATAGTATG
CGGCGATAGGCCACGTTGACACTATTG
NNNCCCCNNNNNNNNNNCCCCNNNNNCCCCCCNNCCCCCCCCNCCCCCCN
GTCCCTTTTTNCTCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAGAAAATGAG
AAAGAGTGGGCTCAAAGCAGACGGGAGAGACTTTCTAAGATGGGTCTTTC
TCACGGACAGTGGGATCAACTCACTGAGCAATGCTTTCTAACTACTACAG
ATTTAAGGGTGCTATATTTATCAGAAGGGATGCAATGCCATTTAAACTAC
AACTTTGTGTCCAAATTACAAATCCTCAAAGGGAAAACAAGGGAATTCTT
AGTAAAAAAAAAATCACACATTTTTTTTTTACATTTTGAATATACTTTAT
TATGTTCCTAAACAAATGTAACTTTTTAAAAAAAATCACACATTTGTTTT
CCCATTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATGCTATACCA
AAAGTCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCCACTCCCCT
TTTATGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTC
CAATGGGCCTCTCTTTCCAGCGATGGCCGACTAGGCCATCTTTTGATGCA
TATGCAGCTAGAGTCCAGAGCTCACGGGTACTGGTTAGATCATAATGTTG
TTCCACCTATAGGGCTGCCAAATCCTTTAGCTTCCTTGGGACTTTCTCCA
ACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_k14.g1 MSMg01no088_k14.g1 CHROMAT_FILE:
MSMg01no088_k14.g1 PHD_FILE: MSMg01no088_k14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:13 2005
         (461 letters)



>mm_chr4_85880461_85881323
          Length = 863

 Score =  559 bits (289), Expect = e-163
 Identities = 305/311 (98%), Gaps = 2/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagagaaaatgagaaagagtgggctcaaagcagacgggagagactttctaagatgggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagagaaaatgagaaagagtgggctcaaagcagacgggagagactttctaagatgggtc 260

                                                                       
Query: 61  tttctcacggacagtgggatcaactcactgagcaatgctttctaactactacagatttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctcacggacagtgggatcaactcactgagcaatgctttctaactactacagatttaa 320

                                                                       
Query: 121 gggtgctatatttatcagaagggatgcaatgccatttaaactacaactttgtgtccaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtgctatatttatcagaagggatgcaatgccatttaaactacaactttgtgtccaaat 380

                                                                       
Query: 181 tacaaatcctcaaagggaaaacaagggaattcttagtaaaaaaaaaa--tcacacatttt 238
           || ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 381 tagaaatcctcaaagggaaaacaagggaattcttagtaaaaaaaaaaaatcacacatttt 440

                                                                       
Query: 239 ttttttacattttgaatatactttattatgttcctaaacaaatgtaactttttaaaaaaa 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 441 ttttttacattttgaatatactttattatgttcctaaacaaatgtaacttttttttaaaa 500

                      
Query: 299 atcacacattt 309
           |||||||||||
Sbjct: 501 atcacacattt 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 863
Length adjustment: 10
Effective length of query: 451
Effective length of database: 853
Effective search space:   384703
Effective search space used:   384703
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)