BAC Information

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BAC

Clone NameMSMg01-089A05
Chromosome4 (Build37)
Map Location 16,652,105 - 16,652,635
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2, LOC667150, LOC383994
Downstream geneLOC100040154, LOC667212, LOC100040173
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089A05.T7 (MSMg01no089_a05.b1)MSMg01-089A05.TJ (MSMg01no089_a05.g1)
ACCAG307621AG307622
length708708
length of high quality
(start - end)
510 (46 - 555)529 (74 - 602)
definitionCHROMAT_FILE: MSMg01no089_a05.b1 PHD_FILE: MSMg01no089_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:40 2005CHROMAT_FILE: MSMg01no089_a05.g1 PHD_FILE: MSMg01no089_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGAATACCCAATGGCTGAGAAGCACTGGAAAAAATGT
TCAACATGCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
GCACCTCACACCACCCAGAATGGCTTAAGATCAAAAATTAAGGTGACAGC
AGATGTTGTCAGGGATGTGGAGAAAGAAGAACACTCCTCCATTGTTGGTG
GAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGATTCTTCA
GAAAATTGGACATAGTACCACTGGAGGATCCAGCAATATCTCTCCAGATA
TTGGGCATATATCCAGAAGATGTTCCAACCAGTAAGAAGGGCACATGCTC
CACTATATTGGTTTATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAA
GAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACAT
TTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGGAAT
TCCTAGACAAATGTTTGCATCTGTAGGGCATAATCCTGAGTGAGGTACCC
CAATCACACAGGAATTTACTTCAATATGTACTCACTGATATGTGGACATT
AGCCCTAGAACTTATATAATACCAGATATAACATACCATTTGCTAACCAC
CTGACTCT
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGTATCACTCTGACATGTACATAAAG
CATCTCTGACCCCAGTGTTCATTTTTCAAGGGGTATGCATTCATTCCATT
TTTGCAACATAGAAGTAGAAAACGTACAAACCCCTTATATAAAGCTCTTA
GTCAGAAACAATTCTATCTCCATGGAACTTTATAAGTCTTTCCAATTTTT
AAGTGAGAAATCTACAACACTCAAGTAATATTTCCAAAAAGCCCTTTCTC
ATTTTGGAGAGTTTTATTCTCTGTGCTTTAAAATACTTCCAGGAAGCTTA
GTGTTCCAAATCCATATACTTATATAACTTACAGGTAAAGTTTAAAATAC
AATACATTTCCTACTACTTACAAGGTTTACTCATGCCATCATAAACATAA
AGGAAAGAGGGGGCATATGCAGTCTCCTTGGTGGTCAAGAGAGTATAAAT
AGTGTGCAAGAGATGACACAAATAGAGAAGACACTTTCCATTTTGGATCA
GGGCCTATTCTAACAAATCTTATAAACACTAATGTTAAGCAACTGATCTG
AGTGGTATGTAGACTTGAAAAAAGCCAAATGTACAATGAATATTCAACAA
TACTTAAAAGAAGGCTAATTCCCTGCACAATGAAAATGTGGTACTGGAGA
GTGCGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_a05.g1 MSMg01no089_a05.g1 CHROMAT_FILE:
MSMg01no089_a05.g1 PHD_FILE: MSMg01no089_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:40 2005
         (529 letters)



>mm_chr4_16651905_16652835
          Length = 931

 Score =  992 bits (513), Expect = 0.0
 Identities = 526/531 (99%), Gaps = 2/531 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtatcactctgacatgtacataaagcatctctgaccccagtgttcatttttcaagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 ctgtatcactctgacatgtacataaagcatctctgaccccagtgttcgtttttcaagggg 260

                                                                       
Query: 61  tatgcattcattccatttttgcaacatagaagtagaaaacgtacaaaccccttatataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgcattcattccatttttgcaacatagaagtagaaaacgtacaaaccccttatataaa 320

                                                                       
Query: 121 gctcttagtcagaaacaattctatctccatggaactttataa--gtctttccaattttta 178
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 321 gctcttagtcagaaacaattctatctccatggaactttataatagtctttccaattttta 380

                                                                       
Query: 179 agtgagaaatctacaacactcaagtaatatttccaaaaagccctttctcattttggagag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgagaaatctacaacactcaagtaatatttccaaaaagccctttctcattttggagag 440

                                                                       
Query: 239 ttttattctctgtgctttaaaatacttccaggaagcttagtgttccaaatccatatactt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttattctctgtgctttaaaatacttccaggaagcttagtgttccaaatccatatactt 500

                                                                       
Query: 299 atataacttacaggtaaagtttaaaatacaatacatttcctactacttacaaggtttact 358
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 atataacttacaggtaaagtttaaaatacaatacatttcctactacttaaaaggtttact 560

                                                                       
Query: 359 catgccatcataaacataaaggaaagagggggcatatgcagtctccttggtggtcaagag 418
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 catgccatcataaacataaaggaaagagggggcatatgcagtctccttgatggtcaagag 620

                                                                       
Query: 419 agtataaatagtgtgcaagagatgacacaaatagagaagacactttccattttggatcag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtataaatagtgtgcaagagatgacacaaatagagaagacactttccattttggatcag 680

                                                              
Query: 479 ggcctattctaacaaatcttataaacactaatgttaagcaactgatctgag 529
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcctattctaacaaatcttataaacactaatgttaagcaactgatctgag 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 931
Length adjustment: 10
Effective length of query: 519
Effective length of database: 921
Effective search space:   477999
Effective search space used:   477999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)