BAC Information

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BAC

Clone NameMSMg01-089C17
Chromosome4 (Build37)
Map Location 14,210,287 - 14,323,010
singlet/doubletdoublet
Overlap geneLOC100040030
Upstream geneLOC100039988, Runx1t1, LOC625831, LOC433687
Downstream geneLOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1, Tmem64
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C17.T7 (MSMg01no089_c17.b1)MSMg01-089C17.TJ (MSMg01no089_c17.g1)
ACCAG307737AG307738
length738769
length of high quality
(start - end)
434 (36 - 469)353 (132 - 484)
definitionCHROMAT_FILE: MSMg01no089_c17.b1 PHD_FILE: MSMg01no089_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:53 2005CHROMAT_FILE: MSMg01no089_c17.g1 PHD_FILE: MSMg01no089_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,322,581 - 14,323,010)(14,210,287 - 14,210,639)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGAA
ACTTATCATAAATCTTTTGAGGAAGAATGGAATCCAAATAAAATTGTTAA
AAAGCTCCATCTGTGAACACAAATGCTAGCCAGAGTATGGGGGTGAAGTC
AGAAATATTTGAGTATTTACTCTTCCTACCCATGGAATAGTATATAATAC
AAATTAAAACAATTTAGTAGACACAGTTAAAAGTCTTCAAAGTTATTTCT
TAAGAATTTGCTTTTCCATTCATACAACTTTGTAAATAATAAAATTCTAA
TCTAAATCTAAAAAACTATTCTCAAGTTCTAAGGACTTCATGGAACTTCA
GCCTCCTCAGTTCTTCTCCTTGCGGATGTTGCACATTTTTGGAATTGATT
TAGAGCACAGTGAAGCACCATCTGTGTGCCATTTACAGTAGGGGAAACGT
TTCTTTAAACTATTTATATTCTGAGATTAAAAAAAAAATTCCCGCTGGAC
ACCGTAGAATCAGTTCTGATTTCTAGAAGAAACTTGGCTTTACTCAATTC
ACAGTCTTAGAATATAGAGATTACACCCCTGTTTTACCGCGAAATCCCAA
TATTTACCCGCTGTCCTTCCGCCTATTCCCCTTGTATACCGCTGTTTCGT
TTGCTTGTACGACACTGTAATCACCCTGTATAATTATGGTCGGCAGTGTG
TTACCATCTTCTGTTTATTTTACCCCACCCCCCTCTCT
TTTTTCCCTNTTTTCCTNNTTTCCCTCTCTTTTTCTCTCCNCCCCCTACC
CCTCCCCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCATTTTGCTCAATAG
ACATAGCAATCAAAAATGCTATAGTATGATAGGGGAGAGTGTCACTAATG
GTTGTAGTGTCTTATTGGGTCATTTTTTATTTATTTGTTTATTTGCTCTT
TTATTTTTTGACATTACAATGTAGTTACATCATGAACCTATTCTTTCTTC
CCTCCAAACCTTCCCATGTGCTCCTCCCTACTCTGTTTCTTGAGAGAATG
ACATCTCAGAGGAGCTTGTATAGTACTTTTCAATTACAAAGGTTTGAAAT
TGTATATATTTTAAAACTGAAAAAGTAAAAAAACCTTATGAGGACCAAGT
CCAGATCTTGTGAATCCTTGGTGTACAAATGAGTGACCTGAGCAAAACCA
TGGGTCTTAACTCAATGTGTCTAGAATGATTCCTAAGCTCCTCTATTTCT
AACAAGCTCTGTGCTTATGGCTCATCTATAATTTGGAAAAGAAGACTGGA
ATTCAAATCTGTCCCATCCTTATACATTCAAAATTAAACAATGCTCTAAT
TATGCCCTATAATTTATTTTAATTTATAGTATCAATGCTAACAATAATTC
AACCTGAATTTGCCAGTATACCATATATTACCTAAGACAATTACCCTTAA
TTGGCACCTCATATATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c17.b1 MSMg01no089_c17.b1 CHROMAT_FILE:
MSMg01no089_c17.b1 PHD_FILE: MSMg01no089_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:53 2005
         (434 letters)



>mm_chr4_14322377_14323210
          Length = 834

 Score =  808 bits (418), Expect = 0.0
 Identities = 427/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggaaacttatcataaatcttttgaggaagaatggaatccaaataaaattgtta 64
           |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaattctggaaacagatgataaatcttttgaggaagaatggaatccaaataaaattgtta 575

                                                                       
Query: 65  aaaagctccatctgtgaacacaaatgctagccagagtatgggggtgaagtcagaaatatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aaaagctccatctgtgaacacaaatgctagccagagtatgggggtgaagtcagaaatatt 515

                                                                       
Query: 125 tgagtatttactcttcctacccatggaatagtatataatacaaattaaaacaatttagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgagtatttactcttcctacccatggaatagtatataatacaaattaaaacaatttagta 455

                                                                       
Query: 185 gacacagttaaaagtcttcaaagttatttcttaagaatttgcttttccattcatacaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gacacagttaaaagtcttcaaagttatttcttaagaatttgcttttccattcatacaact 395

                                                                       
Query: 245 ttgtaaataataaaattctaatctaaatctaaaaaactattctcaagttctaaggacttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttgtaaataataaaattctaatctaaatctaaaaaactattctcaagttctaaggacttc 335

                                                                       
Query: 305 atggaacttcagcctcctcagttcttctccttgcggatgttgcacatttttggaattgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atggaacttcagcctcctcagttcttctccttgcggatgttgcacatttttggaattgat 275

                                                                       
Query: 365 ttagagcacagtgaagcaccatctgtgtgccatttacagtaggggaaacgtttctttaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttagagcacagtgaagcaccatctgtgtgccatttacagtaggggaaacgtttctttaaa 215

                     
Query: 425 ctatttatat 434
           ||||||||||
Sbjct: 214 ctatttatat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no089_c17.g1 MSMg01no089_c17.g1 CHROMAT_FILE:
MSMg01no089_c17.g1 PHD_FILE: MSMg01no089_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:53 2005
         (353 letters)



>mm_chr4_14210087_14210839
          Length = 753

 Score =  675 bits (349), Expect = 0.0
 Identities = 352/353 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcattttgctcaatagacatagcaatcaaaaatgctatagtatgataggggagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttcattttgctcaatagacatagcaatcaaaaatgctatagtatgataggggagagtg 260

                                                                       
Query: 61  tcactaatggttgtagtgtcttattgggtcattttttatttatttgtttatttgctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactaatggttgtagtgtcttattgggtcattttttatttatttgtttatttgctcttt 320

                                                                       
Query: 121 tattttttgacattacaatgtagttacatcatgaacctattctttcttccctccaaacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattttttgacattacaatgtagttacatcatgaacctattctttcttccctccaaacct 380

                                                                       
Query: 181 tcccatgtgctcctccctactctgtttcttgagagaatgacatctcagaggagcttgtat 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tcccatgtgctcctccctactctgtttcttgagtgaatgacatctcagaggagcttgtat 440

                                                                       
Query: 241 agtacttttcaattacaaaggtttgaaattgtatatattttaaaactgaaaaagtaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtacttttcaattacaaaggtttgaaattgtatatattttaaaactgaaaaagtaaaaa 500

                                                                
Query: 301 aaccttatgaggaccaagtccagatcttgtgaatccttggtgtacaaatgagt 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaccttatgaggaccaagtccagatcttgtgaatccttggtgtacaaatgagt 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)