BAC Information

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BAC

Clone NameMSMg01-089C20
Chromosome4 (Build37)
Map Location 43,721,493 - 43,721,700
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71
Downstream geneLOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089C20.T7 (MSMg01no089_c20.b1)MSMg01-089C20.TJ (MSMg01no089_c20.g1)
ACCAG307743AG307744
length675819
length of high quality
(start - end)
293 (29 - 321)207 (128 - 334)
definitionCHROMAT_FILE: MSMg01no089_c20.b1 PHD_FILE: MSMg01no089_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:53 2005CHROMAT_FILE: MSMg01no089_c20.g1 PHD_FILE: MSMg01no089_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATCACTATGTATACCCTGCTGGCCTCAACTCAGAGATC
CACTTGGCTCTGCCTCTGCCGAGATTATGCTGAGACTAAAGGCATCGTGT
TTAGCTTCAATTCAATATTTTCTTTATTGGGGGGGGGGAGCTGAGACAGG
GTTTCTCCGTATAGCCTTGGCTGTCCTGGAACTCACTCTGTAGATCAGGC
TGGCATTGAACTCAGAAATTATATGTATATATATATATATATATATATTC
AATATTTTCAAACATTCAAATGCAAGTAGCACTCTTATAATTTTTTTCTA
GGTAGCCCTGTCAAATTTATTCCTTGGTCCCCCCCCCCCCCCCGCTGGAA
AGGTCTTTAGAGATTTCTTAAATTTTCTCCCCTGGGCACCTGGAGGTTCA
TGAGTGGCTTAGAAGTACTGAGAGGCATTGCCATAAAGCTCTGAGGCGTT
TACCCTTGTTCCAACTAGAACTATCTTGCTGTCATCTTATTTTCTTATTG
TGCATTTCCATTCTTGCTGTCTGTCCGTCACCCTTCCCGTACTGCCTTCC
TATGTCCATTCCCCATTCTCATCTCTTGTCTGTCCCTTGTGTTGTCCGCC
CTACTTCCTTTACTTCCCTAACTTTGTTCCTTTTTTACCGCGTTTATTTG
CTTTACCATTTATACTTCCTTCCCT
TTTTTTTTTTTTTTCGTTGTGCTCTTGTCCGCCCNNNNNNACCTTNNNNN
CATCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATTTACTACACTCATGTGCGTT
TGTGAATGGCCACACACGCATGCATGAGCCTATGCGTAGGATAGACACTC
ACAGGTGTATATGGACTGGTGTGTTAGACAGGTGTTGTGCACTCAGTTGT
GTGTATGCACTGCAGGTGACCCCATGTTTGTGTGTGTGCGTGTTCCAGCG
CATATTCCATGGCCCCAGCTGCCAATGTTGCCTAGAGACTGACAGGATGA
ACTGTACTGTGTGCAACCACTCTAATATCACTCCGAGGCTGACTCCAGTC
ATTGGAGCCTCATTTTTTTTTTTCCCCCCCCCCCCCCCTTGCCCCATTCT
GTATACAGTGCTTGCTCCCGATCATCCCTAAGAAATACTATATAACCCGG
GGGGGGTGTCTAGTCCTCACACAATCCCCTAATTTCGTCTTCGTAGTCCT
ACCTCGTAGTTTGTTACTCCTCCTCGACCCCATGTTCGCTGTTCACAGCT
TACGTTTGCCCACCCACACCCTACTGCCCCAATTTTCCTCCTAACTGGTA
TCAAACCCTCCTCCTTCGCTTGTGTTTGCGTCTTCCCTTTCCTTTTTTGT
TATTCCATCCCTTATCGTATTTGCACCCCAGATTTTTCGAGACCCATACT
GTTCTTAGATTTCTCCCCTCTCTTCCATATCATTATCACCCCCCCCTTTT
ATTACCTTCTCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_c20.g1 MSMg01no089_c20.g1 CHROMAT_FILE:
MSMg01no089_c20.g1 PHD_FILE: MSMg01no089_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:54 2005
         (207 letters)



>mm_chr4_43721293_43721900
          Length = 608

 Score =  356 bits (184), Expect = e-103
 Identities = 202/208 (97%), Gaps = 1/208 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttac-tacactcatgtgcgtttgtgaatggccacacacgcatgcatgagcctatgcg 59
           ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 408 tatttacatacactcatgtgcgtttgtgaatggccacacacgcatacatgagcctatgcg 349

                                                                       
Query: 60  taggatagacactcacaggtgtatatggactggtgtgttagacaggtgttgtgcactcag 119
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 348 taggatagacactcacaggtgtatatggactggtgtgttagacagatgttgtgcactcag 289

                                                                       
Query: 120 ttgtgtgtatgcactgcaggtgaccccatgtttgtgtgtgtgcgtgttccagcgcatatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 288 ttgtgtgtatgcactgcaggtgaccccatgtttgtgtgtgtgcgtgttccagcgcatagc 229

                                       
Query: 180 ccatggccccagctgccaatgttgccta 207
           ||| ||||||||||||||||||||||||
Sbjct: 228 ccagggccccagctgccaatgttgccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 608
Length adjustment: 9
Effective length of query: 198
Effective length of database: 599
Effective search space:   118602
Effective search space used:   118602
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)